Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3700 ATGTCACAATCGATGGCGCTCTCTTCATCCTTATCAGAAGGCAAGAAGAAGAAGAAACACACCAACAAACATGGCGAAGAAGAACAACAACAAACGGAGGAGCAACAAAACAACAAAGATTTCATGATCAAACCAGAAAAAATATCACCAACAATTGACACATCAAATTGGCCAATCCTTTTGAAAAACTACGACCGTCTCAATGTCCGTACCGGTCACTACACACCTCTTCCCGCCGGTCACTCACCGTTGAAGCGGCCACTTGCTGATTATCTCAAATACGGTGTTCTCAACCTTGACAAGCCTGCAAATCCATCTTCTCATGAAGTTGTTGCTTGGATAAAGCGGATTCTTCGTGTCGAGAAAACCGGTCACAGTGGTACATTGGATCCTAAAGTTACTGGTAATTTGATTGTTTGTATTGACAGAGCAACAAGACTTGTTAAATCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTCGGCTTCATTCTGCTGTTCCTGATGTTTCTAAGGTAGCTCGTGCTCTTGAAACATTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAAAGACATTTAGTTGTTTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAATTCTTGGTGTTGGTGCTCATATGCAAGAGCTTAGGAGGGTTAGGTCAGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTATCGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTAGAGGTACTTTTGACTAGTTATAAGAGATTAGTTGTTAAGGATTCGGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGGTTACTTAGGTTTGAGAATGATATTGAAGCTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGCGAAGCTATTGCTCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTTCAGGGAAGTTGGATAAGCATGGGAAGCCAAATGAGAGTACTCCTCAAGAGTGGTTGAGGAATGTTGTTTTGCCTGCCGGTGGGGATAGTGTTATTGCAGGAATGGCGGCTGCTACTGAAGATGCGAAGAAAGAGGTTGCCGATGTGGATGTTAAGAAGGATGGTGATGGTGAAGGGCGTAAAAGAAAGAAACATGAATCTGCCGATAGCCCTGCTCCTGCTACTAAGAAGTCTAAAGTTGATGATGAAGAAAAGGTGAAGACCAAGAAAGTAGATGATGCGGCGGTGGAGGTTGAAGGTGAGAAGACAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGATGTGGCAGCTTCTGATGAGGATAAGGCTGAAAAGGAGAAGAAAAAGAAGCACAAGGTAAAGGATGAAGTTGGTTCTCTTGAAGTGGACAAGTCTGAGAAGAAGAAAAAGAAGCAAAAGGAAAAGAGCGAAGACGGTTCCCCTGAAGTGGACAAATCTGAGAAGAAAAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCAGAGATAAGTAATGGAAACGACGAGAGCAAAGCTGAAAAGAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAA 1842 0.4121 MSQSMALSSSLSEGKKKKKHTNKHGEEEQQQTEEQQNNKDFMIKPEKISPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPLADYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAERHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIASGKLDKHGKPNESTPQEWLRNVVLPAGGDSVIAGMAAATEDAKKEVADVDVKKDGDGEGRKRKKHESADSPAPATKKSKVDDEEKVKTKKVDDAAVEVEGEKTEKKKKKKKDKENGDVAASDEDKAEKEKKKKHKVKDEVGSLEVDKSEKKKKKQKEKSEDGSPEVDKSEKKKKKKDKEAKDNAAEISNGNDESKAEKSEKKHKKKKNKDAQEE* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3700 613 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 16 535 IPR004802 GO:0006396
Tpr7g3700 613 SMART DKCLD_2 53 111 IPR012960 -
Tpr7g3700 613 Coils Coil 593 613 - -
Tpr7g3700 613 Pfam tRNA pseudouridylate synthase B C-terminal domain 232 298 IPR032819 -
Tpr7g3700 613 MobiDBLite consensus disorder prediction 440 598 - -
Tpr7g3700 613 SMART pua_5 302 376 IPR002478 GO:0003723
Tpr7g3700 613 Pfam TruB family pseudouridylate synthase (N terminal domain) 115 231 IPR002501 GO:0006396
Tpr7g3700 613 SUPERFAMILY PUA domain-like 301 382 IPR015947 -
Tpr7g3700 613 TIGRFAM CBF5: putative rRNA pseudouridine synthase 61 386 IPR004802 GO:0006396
Tpr7g3700 613 Pfam DKCLD (NUC011) domain 54 111 IPR012960 -
Tpr7g3700 613 Gene3D Pseudouridine synthase 87 293 - -
Tpr7g3700 613 Gene3D PUA domain 54 385 IPR036974 GO:0003723
Tpr7g3700 613 MobiDBLite consensus disorder prediction 438 613 - -
Tpr7g3700 613 ProSiteProfiles PUA domain profile. 301 376 - -
Tpr7g3700 613 Coils Coil 518 538 - -
Tpr7g3700 613 MobiDBLite consensus disorder prediction 12 34 - -
Tpr7g3700 613 Pfam PUA domain 302 374 IPR002478 GO:0003723
Tpr7g3700 613 TIGRFAM unchar_dom_2: uncharacterized domain 2 296 373 IPR004521 GO:0003723
Tpr7g3700 613 SUPERFAMILY Pseudouridine synthase 54 299 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr7g3700 613 MobiDBLite consensus disorder prediction 1 44 - -
Tpr7g3700 613 CDD PseudoU_synth_hDyskerin 93 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3700 Tpr-Chr7 45791084 45793317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3700 11 478 NAC Transcription Factor Family AT3G57150 80.851 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3700 K11131 - gmx:100806355 808.905