Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3556 ATGAGACCAATTCTGATGAAAGGCCATGAAAGGCCTTTAACATTCCTTAAGTACAACAGAGATGGCGATCTTCTATTTTCTTGCGCCAAAGATCACAACCCCACTGTCTGGTTTGCCGACAACGGCGAACGCTTAGGAACTTATCGAGGCCATAATGGTGCTGTTTGGTGCTGCGATGTCACAAGAGATTCGGGTCGACTCATTACTGGCAGCGCTGACCAGACGGCGAAGCTGTGGAATGTACAAACTGGTCAACAATTGTTCACCTTCAATTTTGATTCCCCAGCAAAGTCTGTCGACTTTTCTGTCGGTGATAAGCTTGCAGTCATCACCACCGACCCCTTTATGGAACTTTCTTCAGCAATCCATATCAAACGCATTGCTAAAGATCCTGCAGACCAAATTGGGGAGTCTGTGCGTGTCATTAAGGGCCCACAGGGTAGAATCAATAGAGCTGTTTGGGGACCCCTCAATCAAACCATTATCAGTGGTGGAGAAGACTCTATCCTTCGAATTTGGGATACTGAGGCATTCCTTCTTTCCTATATATTTATTTATGTTGCAACACTCACTATCATATCATCAACCACAATTATTTCATTCTATTTCACTTACTTGCAGACCGGAAAACTACTTAAGGAAACAGACAAGGAATCTGGCCACAAAAAGACAATAACCTCACTTGTTAAATCTGCGGATGGATCACATTTCCTAACCGGCTCCCTTGATAAGTCTGCTAAGCTTTGGGATAGCAGAACATTGACTCTTATCAAGACATATGTGACTGGTAGCCCTGTCAATGGAGTTGCAATGTCCCCCCTTCTTGATCATGTGGTTCTTGGAGGTGGTCAGGAGGCATCGGCTGTTACAACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAGTTCTATGATAAGATTCTTCAAGAAGAAATTGGCGGTGTGAAAGGACATTTTGGACCAATTAATGCACTGGCCTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGATATGTACGTTTGCATCACTTTGACCCAGAATATTTCAATATCAAAATTTAG 1074 0.4311 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVTRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPAKSVDFSVGDKLAVITTDPFMELSSAIHIKRIAKDPADQIGESVRVIKGPQGRINRAVWGPLNQTIISGGEDSILRIWDTEAFLLSYIFIYVATLTIISSTTIISFYFTYLQTGKLLKETDKESGHKKTITSLVKSADGSHFLTGSLDKSAKLWDSRTLTLIKTYVTGSPVNGVAMSPLLDHVVLGGGQEASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPEYFNIKI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Tpr7g3556 357 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 357 IPR027525 GO:0003743|GO:0005737|GO:0005852
Tpr7g3556 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 207 357 - -
Tpr7g3556 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 177 - -
Tpr7g3556 357 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Tpr7g3556 357 Pfam WD domain, G-beta repeat 219 250 IPR001680 GO:0005515
Tpr7g3556 357 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515
Tpr7g3556 357 Pfam WD domain, G-beta repeat 137 174 IPR001680 GO:0005515
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Tpr7g3556 357 CDD WD40 7 345 - -
Tpr7g3556 357 SUPERFAMILY WD40 repeat-like 4 345 IPR036322 GO:0005515
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 176 - -
Tpr7g3556 357 Gene3D - 1 357 IPR015943 GO:0005515
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 176 IPR001680 GO:0005515
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Tpr7g3556 357 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 345 - -
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 253 - -
Tpr7g3556 357 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Tpr7g3556 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 177 - -
Tpr7g3556 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 207 357 - -
Tpr7g3556 357 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Tpr7g3556 357 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Tpr7g3556 357 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Tpr7g3556 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 345 IPR001680 GO:0005515
Tpr7g3556 357 SMART WD40_4 135 174 IPR001680 GO:0005515
Tpr7g3556 357 SMART WD40_4 41 80 IPR001680 GO:0005515
Tpr7g3556 357 SMART WD40_4 1 38 IPR001680 GO:0005515
Tpr7g3556 357 SMART WD40_4 308 347 IPR001680 GO:0005515
Tpr7g3556 357 SMART WD40_4 208 250 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3556 1 357 Eukaryotic Initiation Factors Gene Family AT2G46290 74.373 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3556 K03246 - gmx:100793485 614.379