Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3516 ATGGCAATCATTGGAAAAATATTTTTCATGTTCTTATTTTTATCTTCAATTTTCACAATAGCCTCATCAAGAAAAGGCCCTTCCTCAAACAACATAGATTGGTGGTGCAACCAAACACCACATTCTCAACCATGCAAAAACTACACAACTCAAATGAACAATAATTTCAAAATCAAACATAGAGTTGAATTTAGAGGAATGCTAGTTCAATTAGCATTAAAACAAGCTCTTATCATGCAAAAAGAAGCACAAGAAAATTCTCATCAAAATTCATTGGTGCATAAAATGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAACCGTACACTTGAAGGCTTAATCAATGCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCGATGCTCAAGATTTCAATTTCATTGTGCAAACCAATGTCATTGAGATGATAAGGAACATTTTAGCCATCAATATGTATTTCATGAAACACAACAAAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAAGCTTTTACAGTCTAACTCTTCACTAAAGTTCAATCTTGTGGTGGCAAAAGATGGTTCTGGACATTTTAAGACAGTGCAAGCTGCTCTTGATGCTGCTGCTAAGAGAAAATTTAAGACAAGGTTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTTGCTGTGCATAATGATAATATTATGTTAGTTGGTGATGGGATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACAACTTATAGCTCTGCTACAGCAGGCATTGACGGACTTCACTTCATTGCACGTGACATCACCTTCCAAAACACTGCTGGTCCACACAAGGGTCAAGCCGTAGCGCTTCGATCAGCCTCTGATCTCTCAGTATTCTACCGTTGTGCCATATCAGGTTATCAAGACACCCTAATGACTCATGCACAACGTCAATTTTACCGACAATGCTACATCTATGGCACCGTAGACTTCATCTTTGGCAATGCTGCAGTGGTATTCCAAAATTGTAACATTTTCGCAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACAGCCCAAGGTCGAGGTGACCCATTTCAAAACACCGGAATTTCATTCCACAATTGTCAAATTAGGGCTGCATCCGATCTAAAGGACGTCGTCGACAAGTACAATACCTTTTTGGGCCGGCCTTGGCAACAATACTCGAGAGTTATGGTAATGAAAACTTTTATGGACACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGGTGAGTATGAAAATTATGGGCCTGGCGCATCAACAAAAGAGAGAGTGAAATGGCCCGGTTATCATGTGATAACAAGCCCAAATGAAGCCTCAAAGTTTACTGTTACTGGACTTCTTGCTGGCCCAACATGGTTGGCTACAGCTACTGTGCCATTTACCTCTGGTCTTTGA 1578 0.3897 MAIIGKIFFMFLFLSSIFTIASSRKGPSSNNIDWWCNQTPHSQPCKNYTTQMNNNFKIKHRVEFRGMLVQLALKQALIMQKEAQENSHQNSLVHKMVHGDCLKLFENTIFHLNRTLEGLINANKTCSPHDAQTWLTTSLTNIETCKSGALELDAQDFNFIVQTNVIEMIRNILAINMYFMKHNKETKEGLFPSWFSRHEKKLLQSNSSLKFNLVVAKDGSGHFKTVQAALDAAAKRKFKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIRAASDLKDVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGASTKERVKWPGYHVITSPNEASKFTVTGLLAGPTWLATATVPFTSGL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3516 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
Tpr7g3516 525 PANTHER PECTINESTERASE 1 524 - -
Tpr7g3516 525 CDD PMEI-like_3 34 181 - -
Tpr7g3516 525 SMART PMEI_2 27 175 IPR006501 GO:0004857
Tpr7g3516 525 PANTHER PECTINESTERASE 1 524 - -
Tpr7g3516 525 SUPERFAMILY Pectin lyase-like 210 524 IPR011050 -
Tpr7g3516 525 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Tpr7g3516 525 Pfam Pectinesterase 212 510 IPR000070 GO:0030599|GO:0042545
Tpr7g3516 525 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Tpr7g3516 525 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Tpr7g3516 525 Gene3D - 206 525 IPR012334 -
Tpr7g3516 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3516 Tpr-Chr7 43714720 43716878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3516 26 525 Carbohydrate Esterase AT3G47400 55.899 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3516 K01051 - gmx:100806133 803.127