Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3505 ATGGAAAGTTTCTTCCACCACCACCACCACCACCACATGAACAACTCCACCACCACCACCACCACCAACAACAACAACAATGATGCACATTTACCACCTGGTTTTCGTTTCCACCCAACAGATGAAGAACTCATAACATTCTACCTTCTCAAAAAAGTACTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAGTGTGAACCATGGGAACTACCAGAAAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGACAGAAAATATCCAACTGGGTTGCGTACAAATAGAGCTACTGAAGCTGGTTACTGGAAAGCAACAGGAAAAGACAGAGAGATTTATAGCTCAAAAACTTACTCTCTTGTTGGTATGAAGAAAACCCTTGTTTTCTACAGAGGTAGAGCTCCTAAAGGTGAAAAAAGTAACTGGGTTATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCATTTTCTCTCAAGAAACTCCAAGGATGAATGGGTCATTTCACGTGTGTTTCAAAAGAGCAACACTGGAAACGGTGGCACAACCGTGTCGGCCACCACAAGTGGTTCAAAAAAGACCAAAATAGCCTCAACAAACTCTGCAAGCAACAATAGCATGAGTCTTTGTCCTGAACCAAGTTCACCTTCTTCGGTGTATCTTCCACCTCTTCTTGATTCATCTCCTTATGCCGCGGCTAGCACCGCCGCATTCAACGGTGGTCAAATGTGTAACTACAATAGCTCCAATAACAACACTGAACAAAAGGAGCACGTGTCCTGTTTCTCCACAACATCTACAACATCAAATGTTGTCTCTGTTCAAAACAACTTCAACAACAACAATGGAAGTTTTGATCTTGTTTCTCATATGAATGCAAACATGGATCCTTTTGCAAGGTTCCAAAGGAATGTTGGTGTTTCTGCTTTTCCTAGCTTGAGATCATTACAAGATAATCTTCAACTTCCTTTCTTTTTCTCCCCGGCGGCGGCGCAGCCTTTTCATGGTGGTGGCGGTGATTTTCTTGGTGGTTGGGGAATGCCGCCGGCCGAGGATCAAAGGGTGGTGGTTGATGGTGGTGGTCACACAATGGGAGTATTGGGTTCATCTGAGCTTGATTGCATGTGGAATTACTAA 1164 0.433 MESFFHHHHHHHMNNSTTTTTTNNNNNDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGGTTVSATTSGSKKTKIASTNSASNNSMSLCPEPSSPSSVYLPPLLDSSPYAAASTAAFNGGQMCNYNSSNNNTEQKEHVSCFSTTSTTSNVVSVQNNFNNNNGSFDLVSHMNANMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPAAAQPFHGGGGDFLGGWGMPPAEDQRVVVDGGGHTMGVLGSSELDCMWNY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3505 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 384 - -
Tpr7g3505 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 22 384 - -
Tpr7g3505 387 ProSiteProfiles NAC domain profile. 31 183 IPR003441 GO:0003677|GO:0006355
Tpr7g3505 387 MobiDBLite consensus disorder prediction 1 20 - -
Tpr7g3505 387 MobiDBLite consensus disorder prediction 188 218 - -
Tpr7g3505 387 Gene3D NAC domain 40 187 IPR036093 GO:0003677|GO:0006355
Tpr7g3505 387 SUPERFAMILY NAC domain 22 183 IPR036093 GO:0003677|GO:0006355
Tpr7g3505 387 Pfam No apical meristem (NAM) protein 32 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3505 Tpr-Chr7 43554065 43556553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3505 23 387 NAC Transcription Factor Family AT5G53950 52.284 1.54e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr7g3505 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3505 - - cam:101501114 538.11