Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3492 ATGGAAGATTCCGAACCCAAATCCGCTGAAAACAACCAACAAACTGAACAAGTGTGTAGTTTTTTCCGAAAAGCAGTGAATAAGAAGAACATAAGGAAGCGAAGTATTGATAGTTATGAGGATGATTCGAATAATGAAGAATCTTTGATGCATGTTCAGAAAAAGAATACGAAGACTTGTAATAAGCTGTTCTTTTCCTCTGCATCTACTGAACAGAAGAAGGAAGAATCTGAGAAACATGGGTTTCATTTTGAGTCATCCAAAGAGATTCAAGTTCAACATGACAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGATTTTTCAAATGATGCTCATGCTAGGCGTGAAAGAGCTCTTAAGCAAGCATCGGAGACTCTTAAGGGAAAGGGAACTGGCTCCGAGGATGGAAAATTATACAAGGGAATGAATAATTACACAGATCATAAAGCTGGATTTCGGAGAGAGCACACAATTTCTGCTGAAAAGGCTGGCGGGTCACACGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTGTCTTCTAAGTTTGATTATCAGCCTGATATATGCAAGGATTATAAAGAGACTGGGTACTGTGGTTACGGTGATTCGTGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGACAAGGAATGGGAACAAGCTCGGAAATCAAAGGTACAACCTTAA 705 0.4057 MEDSEPKSAENNQQTEQVCSFFRKAVNKKNIRKRSIDSYEDDSNNEESLMHVQKKNTKTCNKLFFSSASTEQKKEESEKHGFHFESSKEIQVQHDSKATATLETETDFSNDAHARRERALKQASETLKGKGTGSEDGKLYKGMNNYTDHKAGFRREHTISAEKAGGSHGPLRASAHIRVSSKFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMDKEWEQARKSKVQP* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3492 234 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 210 IPR000571 GO:0046872
Tpr7g3492 234 MobiDBLite consensus disorder prediction 68 94 - -
Tpr7g3492 234 MobiDBLite consensus disorder prediction 69 92 - -
Tpr7g3492 234 MobiDBLite consensus disorder prediction 32 53 - -
Tpr7g3492 234 MobiDBLite consensus disorder prediction 32 54 - -
Tpr7g3492 234 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Tpr7g3492 234 PANTHER ZINC FINGER PROTEIN 183 10 231 IPR039971 -
Tpr7g3492 234 SUPERFAMILY CCCH zinc finger 183 215 IPR036855 GO:0046872
Tpr7g3492 234 MobiDBLite consensus disorder prediction 122 141 - -
Tpr7g3492 234 Gene3D - 179 216 - -
Tpr7g3492 234 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 231 - -
Tpr7g3492 234 SMART c3hfinal6 184 211 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3492 Tpr-Chr7 43405479 43406799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3492 2 231 C2H2 Transcription Factor Family AT1G01350 63.404 3.12e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g3492 zf-CCCH 3.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3492 K13127 - gmx:100817146 353.984