Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3455 ATGATTGATACCAAGCCACTTGTATCTGCAATGGCCTCAATTGTTCTGATGCGAACCATCACGAATGAACTCATTCCTCACGAGCTCCTACACTTTGTTCAATCGGGACTTCAGCATCTTTTTCGCCAATTCTCTGCGGAATTCACCATAGTCATTGAAGAATTTCAAGGGATGGCAAGAAACCTGGTTTTTGAGGCTGCAGAAGCCTATCTAGGAACTAAAGCGACAATTGCAGCAGAAAGAGTTAAAGTAAGCAAATCAGACGATCATAAAAAGCTTTCATTCAATATTGATAGAAATGAAGAAGTGAGTGATGTTTTTGAAGGTGTTAGTGTAAAGTGGAAACTAATTTGCATACAAGTTGACTCGTCAAGGATTCGACATTACGATGATGAATCCTCACCCGTGTCAGAAATAAGATCCTATGAGCTAACTTTTCACAAGAAACACAAAAACAAAATCTTCGATTCATATTTGCCTTATGTGATGGATATAGCTAAGAAGATTAAACAAGGAAACATCGCAATTAAGATTCACTCATACGAATATAATCGCTGGGGTCGTGAACCTATTAAATTCAACCATCCGATGAGTTTCAACACTCTGGCAATTGACGAAGAGCTTCAAAGAGATATTACGAATGATTTGGACAAATTTGTGAGAGCTAGAGAGTTTTATAGAAGAACTGGTAAAGCTTGGAAACGCGGTTACTTGTTGTATGGTCCTCCTGGTACCGGCAAGACTAGCTTGATTGCAGCTATGGCTAACTATCTCAACTATGATATCTATGATATGGATCTCACTGCTGTTCACGATAATAAGCAGTTGAAGCAACTGCTTCTTGCCATGTCCAACCGTTCTATACTTGTGATCGAGGATATTGATTGTACTGTAAATTTGCAAAACCGAGAAGACGATAAAGAAGTTGTTCACAATGGACACAATATGATGACACTTTCGGGACTATTGAATGCAGTAGATGGTCTTTGGTCATGCTGTGGAGAGGAACACATAATTATTTTCACAACAAATCACAAAGAAAGACTTGATCCTGCTCTTCTAAGGCCTGGTAGAATGGATAAGCAAATTCACTTGTCATATTGCAACTTTTCTGCTTTTAAGCAATTAGCCATCAACTATCTTTGCATTACTGAACATGAACTCTATGAAAAGATTCAAGTGCTTCTAGGACAAGTTCAAGTTACCCCGGCTGAAATTGCCGAAGAGCTTACAAAGGATGCTGATGCTACAGAGTGTCTACAAGACCTTATCAACTTCCTTCAAGCCAAGAAAATGATCAAGGTAGAGAATGAGAAGAATGAAGAAAATATCAAAGAAGAACTTGATAATCAAGAATCTCTTTAA 1365 0.3824 MIDTKPLVSAMASIVLMRTITNELIPHELLHFVQSGLQHLFRQFSAEFTIVIEEFQGMARNLVFEAAEAYLGTKATIAAERVKVSKSDDHKKLSFNIDRNEEVSDVFEGVSVKWKLICIQVDSSRIRHYDDESSPVSEIRSYELTFHKKHKNKIFDSYLPYVMDIAKKIKQGNIAIKIHSYEYNRWGREPIKFNHPMSFNTLAIDEELQRDITNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKTSLIAAMANYLNYDIYDMDLTAVHDNKQLKQLLLAMSNRSILVIEDIDCTVNLQNREDDKEVVHNGHNMMTLSGLLNAVDGLWSCCGEEHIIIFTTNHKERLDPALLRPGRMDKQIHLSYCNFSAFKQLAINYLCITEHELYEKIQVLLGQVQVTPAEIAEELTKDADATECLQDLINFLQAKKMIKVENEKNEENIKEELDNQESL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3455 454 Pfam ATPase family associated with various cellular activities (AAA) 238 366 IPR003959 GO:0005524|GO:0016887
Tpr7g3455 454 Coils Coil 434 454 - -
Tpr7g3455 454 PANTHER BCS1 AAA-TYPE ATPASE 4 440 - -
Tpr7g3455 454 SMART AAA_5 233 369 IPR003593 -
Tpr7g3455 454 Gene3D - 364 435 - -
Tpr7g3455 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 410 IPR027417 -
Tpr7g3455 454 CDD AAA 234 367 - -
Tpr7g3455 454 Gene3D - 189 363 IPR027417 -
Tpr7g3455 454 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 440 - -
Tpr7g3455 454 Pfam Domain associated at C-terminal with AAA 25 117 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3455 Tpr-Chr7 42825302 42828275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3455 209 369 Calmodulin-binding Proteins AT3G56690 27.746 1.88e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3455 K08900 - gmx:100778503 564.688