Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3434 ATGGTAGAGGTCCACCCAGAAGAATTCCCAGAAATGGCCAATCTCGTTCAAGGAGCAGGCCAGGATGTTCTTGTTGATCCCCATCGAGAATTGCGTTTGGACATTGAAGGAATGTCTTATGAGGACCTTCTTGCTTTGGGTGAGAGGATCGGCAACGTAAACACTGGTGCATCAGAAGAAATAATTACTTCTCAACTGAAAACAAAATTATACACTCCAAACTTCCTTAGTATTGATTTGAATGAGTTACCTCCGGAAGATCACGAATCAGACACTTGCATTATATGCCAAGATGAATTTAAATATCGCGATAATATTGGAACAATTCAATGCGGGCACGAATTTCATGCTGATTGCATTTCTGAGTGGTTGATGCTGAAAAACGAATGTCCTATTTGCAAATCAGAAGCCATAACAAAAAAAGATTGA 429 0.3986 MVEVHPEEFPEMANLVQGAGQDVLVDPHRELRLDIEGMSYEDLLALGERIGNVNTGASEEIITSQLKTKLYTPNFLSIDLNELPPEDHESDTCIICQDEFKYRDNIGTIQCGHEFHADCISEWLMLKNECPICKSEAITKKD* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3434 142 Pfam Ring finger domain 91 134 IPR001841 -
Tpr7g3434 142 SMART FANCL_C_2 89 142 - -
Tpr7g3434 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 138 IPR013083 -
Tpr7g3434 142 SMART ring_2 93 133 IPR001841 -
Tpr7g3434 142 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 4 140 - -
Tpr7g3434 142 SUPERFAMILY RING/U-box 85 140 - -
Tpr7g3434 142 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Tpr7g3434 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 140 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3434 Tpr-Chr7 42598470 42599741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3434 26 138 C3H Transcription Factor Family AT2G15530 52.586 3.06e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3434 K19041 - tcc:18594097 166.007