Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3428 ATGATGAAGAAGAACAATATGAGCACAAGTTTGAAAAGCTATCATCACCATACTTATTACAACAACAATCCAATCATAACAAACAAAAGTCCTTCTCATAGTAATAATGGATCATCATCAGAAGATTATATGAATGGATATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAGTTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCAAGACTTAGACAATCATCACCACCAACTCATGAAGTTCAACCACCAACTCAAGGTTCTTCTATGCTTAACCTTAATAACCCTACTAACCCTAATAACTTTTTCTCAAACTCATCTTCATCATCACCATTATCATCATCTTCCACTTTAGGAACAAATCTTAAGCCTATTACTTGCACTTTACCTTTGTTTGTTGTGGATGGTATTTTGTTGAACCCTACTTTGAGCAAAATGACCAAAGAGCCCTTAAGAAAATCAAATATGGAACAATATGATGATTTAGCTTGTGAAGATGAATGTGGAATGGTGAAGAAAGGTGAGATTCTAAGGATGGATTTGGAGATAGGTTTGCCAGGAGATTATGATGATAATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTACTCTAATTAG 660 0.3545 MMKKNNMSTSLKSYHHHTYYNNNPIITNKSPSHSNNGSSSEDYMNGYPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEVQPPTQGSSMLNLNNPTNPNNFFSNSSSSSPLSSSSTLGTNLKPITCTLPLFVVDGILLNPTLSKMTKEPLRKSNMEQYDDLACEDECGMVKKGEILRMDLEIGLPGDYDDNNLDLELRLGTTTYSN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3428 219 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 217 - -
Tpr7g3428 219 Pfam C2H2-type zinc finger 54 78 - -
Tpr7g3428 219 PANTHER OS07G0101800 PROTEIN 3 217 - -
Tpr7g3428 219 SMART c2h2final6 54 76 IPR013087 -
Tpr7g3428 219 MobiDBLite consensus disorder prediction 81 100 - -
Tpr7g3428 219 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Tpr7g3428 219 Gene3D Classic Zinc Finger 50 103 - -
Tpr7g3428 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Tpr7g3428 219 SUPERFAMILY beta-beta-alpha zinc fingers 51 80 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3428 Tpr-Chr7 42526258 42527019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3428 35 213 C2H2 Transcription Factor Family AT3G23130 39.247 3.11e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g3428 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3428 - - gmx:100781722 197.208