Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3403 ATGGCATCATCATCAGCCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGAGAGGAATTGGTAATGGAGGAAGTGGAAGTCAGTCCTCCCCAACCATTGGAGATTAGAATTAAGGTTGTCTCCACCTCTATCTGTTCTAGGGATCTTAATGCTCGGAAATATCAAGCCATATTTCCTCGCATATTTGGCCATGAAGCATCTGGAATTATTGAGAGTGTAGGGCAAGGAGTTACTGAATTCAATGAAGGGGACCATGTGTTAACAGTTTTCATTGGAGAATGCATGTCATGCAGGACATGCAAATCAGGAAAGAGTAGTATTTGCCAAGTTTTGGGATTGGAAAAAAAGGGTTTAATGCATAACGATCAAAAAACGCGATTCGCGGTAAAAGGGGAGCCTGTTTATCATTTTTGTGCAATTTCAAGTTTCAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTAAAAATCAGTCCTCATGTACCTCTTGAGAAAGTATGCCTTCTCAGTTGTGGTGTTGCTGCAGGTTTGGGTGCGGCATGGAATGTTGCTGATGTGTCAAAGGGATCAACGGTGGTTATATTTGGTCTTGGAACGGTTGGCCTTTCTGTTGCTCAAGGCGCCAAACTAAGGGGTGCGTCTAGAATAATTGGTGTTGACAAAAATCCACGAAAGTGTGTAAATGCTAAAGCTTTTGGGATTACTGAAGTAATTGATCCAAATTTGTACAAAGAACGGCCTATCGCGCAGGTTATAAGGCACATTACTGATGGTGGAGCAGATTTCTGTTTTGATTGTGTAGGTGACACTGATATCATAACCACTGCATTGGAGTCATGTTGTGATGGATGGGGTGTGACTGTAGCACTTGGTGTGCCAAAGGCTAAGCCTAAGATCTCAGCTCATTATTCTCTATTCCTTAGAGGAAGAACTTTAAAAGGATCTATATTTGGAGGATTGAAACCTAAATCAGATATTCCTTCTTTAGTAGAGAAGTATATGAATAAGGAAATCCAAATTGATGACTACATAACACACAATTTGCCATTTGATGACATTAACAAAGCCTTCAATCTTATGACAGAAGGAAAGTGTCTTCGTTGTGTAATCCACATGCCAAGATAA 1137 0.4116 MASSSAPQVITCKAAVAWGAGEELVMEEVEVSPPQPLEIRIKVVSTSICSRDLNARKYQAIFPRIFGHEASGIIESVGQGVTEFNEGDHVLTVFIGECMSCRTCKSGKSSICQVLGLEKKGLMHNDQKTRFAVKGEPVYHFCAISSFSEYTVVHSGCAVKISPHVPLEKVCLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDKNPRKCVNAKAFGITEVIDPNLYKERPIAQVIRHITDGGADFCFDCVGDTDIITTALESCCDGWGVTVALGVPKAKPKISAHYSLFLRGRTLKGSIFGGLKPKSDIPSLVEKYMNKEIQIDDYITHNLPFDDINKAFNLMTEGKCLRCVIHMPR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3403 378 Pfam Zinc-binding dehydrogenase 204 332 IPR013149 -
Tpr7g3403 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
Tpr7g3403 378 Gene3D - 180 319 - -
Tpr7g3403 378 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Tpr7g3403 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Tpr7g3403 378 Gene3D - 15 371 - -
Tpr7g3403 378 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 6 376 - -
Tpr7g3403 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 340 IPR036291 -
Tpr7g3403 378 Pfam Alcohol dehydrogenase GroES-like domain 38 160 IPR013154 -
Tpr7g3403 378 SUPERFAMILY GroES-like 6 185 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3403 Tpr-Chr7 42287919 42291751 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3403 38 175 Monolignol Biosynthesis Gene Families AT4G37970 28.169 4.68e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3403 K00001 - gmx:100819938 654.055