Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3350 ATGGCTTTCATGATTGGTAATGGTGAACATTTTTCTGAAATTGAAAAAATTGATTCTGAGAGAACAAGTTGGAATTTAAAGGCAAAAATTTTAAGGCTATGGGAAGTTTCTGATTTCTCTCGACCTAACAGTCCTTTCTCTTTAGAAATGGTTTTGATGGATTCTGAGGGTGGTAGAATCCATGCTACTGTTAAGAAAACACTTATCTATAAATTTAAGGATGATTTAAGTGAAGGAAAAGTTTATAGTTTTGAAAATTTGGGGGTTTCGACTAATGGTGGAGCATACCGTACTACTCAGCATCGCTACAAGCTGAATTTCCAGTTTGGATCGGTGGTTCAGAGGATTACGAACCATGATGTTAAGGGATCTCCTTTTCATTTAGTTCCTATTTCTGATGTTGTGAGTGGAAGTTATGATACTGACTATTTAGTGGATGTTATAGGGGTGTTGACTGGTGTTGGAACAAAACGTGAGGTAACAAGCCAGCATGGATCTACCACTAAGCTTAATGTGATTGCTCTAGAGGCACAAGGGCATAAGATTCAATGCACTCTATTTGGTCCGTATGTTGATGAACTGAATGCTTTTATTGCTTCTGGAGATTACAACAATGCAGTAGTGATTGTGCAACTAGCAAAGGCCAAGACTTTTCAAGGGGGGTACGTTTCTTGCAAGACAACAATTGGGGAAGAGAGTAACAATCATGAACTCTTGAATGTTTTAGGCTTTGGACAATTGCTGAATATAATTTTAATGTTGAAGAATAGATGCAGTTACCATCACTGTTTTTTGTTTTTGTAA 804 0.3706 MAFMIGNGEHFSEIEKIDSERTSWNLKAKILRLWEVSDFSRPNSPFSLEMVLMDSEGGRIHATVKKTLIYKFKDDLSEGKVYSFENLGVSTNGGAYRTTQHRYKLNFQFGSVVQRITNHDVKGSPFHLVPISDVVSGSYDTDYLVDVIGVLTGVGTKREVTSQHGSTTKLNVIALEAQGHKIQCTLFGPYVDELNAFIASGDYNNAVVIVQLAKAKTFQGGYVSCKTTIGEESNNHELLNVLGFGQLLNIILMLKNRCSYHHCFLFL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3350 267 Gene3D - 9 115 IPR012340 -
Tpr7g3350 267 Gene3D - 119 240 IPR012340 -
Tpr7g3350 267 SUPERFAMILY Nucleic acid-binding proteins 11 116 IPR012340 -
Tpr7g3350 267 PANTHER REPLICATION FACTOR A 1, RFA1 28 229 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g3350 267 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tpr7g3350 267 CDD RPA1_DBD_B_like 146 221 - -
Tpr7g3350 267 CDD RPA1_DBD_A_like 26 113 - -
Tpr7g3350 267 SUPERFAMILY Nucleic acid-binding proteins 126 226 IPR012340 -
Tpr7g3350 267 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3350 Tpr-Chr7 41626980 41631128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3350 24 223 Core DNA Replication Machinery Family AT2G06510 22.857 4.52e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3350 - - mtr:MTR_4g036240 276.174