Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3340 ATGAAAATTCAGTGTAACGTGTGTGAAGGTGCAGAAGCTAAGGTTCTTTGTTGTGCTGATGAAGCAGCTTTGTGTTGGGAATGTGATGAGAAAGTTCATGCTGCTAATAAGCTTGCTAGTAAACATCAAAGAGTTCCTCTTTCTACATCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTTTGCCTCGAGGACCGTGCTTTACTCTGTCGAAAATGTGATTTAGCAATACACACTGCAAATGCCTTTGTCTCAGGACATCAAAGGTTTCTTCTCACCGGTGTAAAAGTCGGCCTTGAGGATGCCGGTGCTTCTTCAAATTCCATGAAGTCAGATTCTGGTGAGAAAGTTTCCGATACAAAATCTTCTTCTGTATCTAGAAAGGTTTCTACAATGCCTCAATCATCAGAATACAATGAAATGTTTCCTACTGATCAAGGTGGTAGAGTTATGGAATTTCCACCTGCAAAGGTTTCTTATGGTGGTGGTTCTTCATCTGGAAACATGTCACAGTGGACAATTGATGAATTTTTCGGCGTAAACGATTTCAGTCAGAACTATAACTACATGGATGGATCATCAAGGGCTGACAGTGGTAAGCTTGATGATTCTGATTCTCCTGTTTTAAGATCCAACGAAGAAGAAATGGAGTACGACGACTACATGGACCGCGTTCCAGATTCATCTTGGACAGTCCCTCAAATCCCTTCGCCTCCTACAGCTTCTGGACTATACTGGCCGAAAAACCCTCGGTATGCATCCGATAATGCTCTATTTGTTCCTGACATAGGCATTTCTACCATGCAACATCCTCAGAATAGTAGTAATTTTTCAAGACCGTGGAATCATCACTAA 876 0.4121 MKIQCNVCEGAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAFVSGHQRFLLTGVKVGLEDAGASSNSMKSDSGEKVSDTKSSSVSRKVSTMPQSSEYNEMFPTDQGGRVMEFPPAKVSYGGGSSSGNMSQWTIDEFFGVNDFSQNYNYMDGSSRADSGKLDDSDSPVLRSNEEEMEYDDYMDRVPDSSWTVPQIPSPPTASGLYWPKNPRYASDNALFVPDIGISTMQHPQNSSNFSRPWNHH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3340 291 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr7g3340 291 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 280 - -
Tpr7g3340 291 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Tpr7g3340 291 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Tpr7g3340 291 MobiDBLite consensus disorder prediction 110 154 - -
Tpr7g3340 291 Gene3D Classic Zinc Finger 1 92 - -
Tpr7g3340 291 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 - -
Tpr7g3340 291 MobiDBLite consensus disorder prediction 111 149 - -
Tpr7g3340 291 CDD Bbox1_BBX-like 5 47 - -
Tpr7g3340 291 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Tpr7g3340 291 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tpr7g3340 291 SMART bboxneu5 52 99 IPR000315 GO:0008270
Tpr7g3340 291 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3340 Tpr-Chr7 41540992 41544165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3340 1 274 C2C2-CO-like Transcription Factor Family AT1G78600 48.243 1.15e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tpr7g3340 zf-B_box 8.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3340 - - gmx:100790959 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3340 7 41540992 41544165 Tpr7g3340 7 41540992 41544165 ECH