Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3147 ATGGAGCAACCACAACACTTAGTAGAACAAAACTTCCCACTCTTCAAACCATCACGCAAACCCTCAACAAACCCTTCACTCTCCACTTCCAATTCCCAAACCCAAACCCCTCAAAACGACGTCGTTACGCATGAAAACCCAACCTCCAACCCCGAAAACACCGCCACCACCACATTCTCCGATCTCGGCCTCTCCGAATGGGCGGTCAAGACATGCAAAGAGCTCGGAATGAAGTTTCCACGCCGCGTCCAACAGTACTGTATCCCAAAGATTCTAGAAGGCCGTCATGTAATTGGAATTGATGAGACTGGTAGCGGTAAAACTGCGGCGTTTGCGCTACCTATTCTTCAGCGACTCGCGGAGCATCCGTTTGGTGTGTTTGCTCTTGTGGTGACGCCGACTCGTGAGCTTGCGTTTCAGTTGGCGGACCAGTTTCGTGCTCTTGGATCATCGGTTCGTCTCCGAACTGCGGTGGTTGTTGGTGGTATGGATATGCTTACACAGACGAAGGAGTTGGTTGCTAGACCTCATCTTGTTATTGCTACTCCTGGGAGGATTAAGGTTTTGCTTAAGGATAATCCTGAAATTGCTCCTGTTTTCGCTAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATAGAGTCCTGGATGTTGGGTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCCGAAAACCGCCAAAACCTATTCTTTTCTGCAACCACGACTAGTAATCTGCAAAAGTTGCGTGAGCGTTATCAAGATAAGCTGTATGCCTTCGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAACTCACTCAACAAGCTGTATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGCATTCGTTCTGCAATTGTCTTCGTCTCTACTTGCAGAGATTGTCATCGTTTAAATTTAATGTTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCAAGAATTTAAATCTGGAAAGGTTCCTATATTATTAGCAACTGATGTTGCTGGTCGCGGTTTGGATATTCCTACGGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATCCACCGTGTTGGTCGTACTGCAAGAGCAGGAAGAGGGGGACTCGCTTTGAGCCTAGTCACTCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCCCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCATTAATGAAAAAGGTTTTCAGTGCTAAGAATGTTGCAAACATGAAAATGATGGATGACGGCTTTGAAGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAAGGATTATTAAAGCAAAGAAGTAAGAGAAAAAGAAATAAAGAATTTGCAGAGAAAAGAAATAAACAGGAAAAAGTGGAAGTAGATGCATTATCAAATATAGAATCTCCAAAAAAAAAGAGTAAGAAGAGAAAGTAA 1560 0.4224 MEQPQHLVEQNFPLFKPSRKPSTNPSLSTSNSQTQTPQNDVVTHENPTSNPENTATTTFSDLGLSEWAVKTCKELGMKFPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLADQFRALGSSVRLRTAVVVGGMDMLTQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQAVFIPKKVKDVYLLHILSKMKDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALQEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERQLEMIEYKENEVLSLMKKVFSAKNVANMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFAEKRNKQEKVEVDALSNIESPKKKSKKRK* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3147 519 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
Tpr7g3147 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 261 IPR014001 -
Tpr7g3147 519 Coils Coil 488 508 - -
Tpr7g3147 519 Pfam Helicase conserved C-terminal domain 299 396 IPR001650 -
Tpr7g3147 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 435 IPR001650 -
Tpr7g3147 519 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 55 487 - -
Tpr7g3147 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 416 IPR027417 -
Tpr7g3147 519 SMART ultradead3 76 276 IPR014001 -
Tpr7g3147 519 CDD DEADc_DDX49 59 262 - -
Tpr7g3147 519 SMART helicmild6 315 396 IPR001650 -
Tpr7g3147 519 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 57 85 IPR014014 GO:0003724
Tpr7g3147 519 Pfam DEAD/DEAH box helicase 82 250 IPR011545 GO:0003676|GO:0005524
Tpr7g3147 519 MobiDBLite consensus disorder prediction 491 511 - -
Tpr7g3147 519 MobiDBLite consensus disorder prediction 16 53 - -
Tpr7g3147 519 Coils Coil 413 433 - -
Tpr7g3147 519 CDD SF2_C_DEAD 273 405 - -
Tpr7g3147 519 MobiDBLite consensus disorder prediction 1 53 - -
Tpr7g3147 519 PANTHER RNA HELICASE 55 487 - -
Tpr7g3147 519 MobiDBLite consensus disorder prediction 459 519 - -
Tpr7g3147 519 Gene3D - 22 260 IPR027417 -
Tpr7g3147 519 MobiDBLite consensus disorder prediction 459 480 - -
Tpr7g3147 519 Gene3D - 268 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3147 Tpr-Chr7 39034044 39041295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3147 57 425 Eukaryotic Initiation Factors Gene Family AT3G19760 30.295 2.00e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3147 K14778 - gmx:100798597 738.413