Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3106 ATGCAGTCTTTGGTTTCTGCAAAGTTTCTTTTGCTTGTTGGAGAATCATTCCCTATGAGAAGGGCTTTGTTGAATTCTAGGTTTGCTTGGTTTCATAGTAGTGTTCAATGTACGAGTCAGAATCATAGTGAATCTCTCACCCTTTCAAGCATTGGTATTAAAAGTGAAAAAATTGAAATTGAACCTAAGATTATAAGTGAATCAAAAAAAGTTAAGCCATTAGGTTTAACTTCTGAGGTTTTGAAGAGTAATAGAAAACCCTTTGGAATTGGTGACAAGAAAAGTGTCAGGGTTAAAGAGAAACAGAAAATAGATAATGCACCATTTGCTGCTAAGTCGTTTTCGGAACTTGGTATCCCAGATGTGTTGATTGAGAGGCTAGGAAAAGAGGGTTTCAATGTTCCGACTGATGTTCAGTCTGCTGCTGTTCCTACTATTTTGAAGAACCATGATGTTATAATTCAGTCGTATACGGGTTCGGGGAAAACATTGGCTTATCTCCTTCCTATATTGTCTGTTATTGGTCCGTTGAGAGGCGAAAATCGTGAAGGTGATGTTGATGGTGGTGAGGCTGGGAAGAAATCGGGAGTTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGAGAGTTTGAGAAGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACTAGGCAAGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACACCTGGTAGGATAGCCGAGCTCAGTGCAAGTGGGAAGCTTCGCACTCACGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAGCTCCTGTCATTCAATTTTCGTGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCGGGTGGAGACCTAAAATCAAATGCTAAAAAGGCCGAGCGTCAGCTAATTATGGTTTCTGCAACTGTGCCGTTTTCGGTTGTTAGGGCAGCTAAAAGTTGGGGTAGCGATCCGCTTCTTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGACTCCTGAGCCGGTCAATTTGTCACCGAACTCGAGTGCTAACTCCTCTAAGCCATCTAAGGCTGTGGTAGAGAGTCTACCTCCAGCGTTGAAACACTATTACTGTGTTGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAAATGTATTCATGCATTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTCGAGGCCCGTGGCGTGAAAGCCGCAGAGTTACATGGTGATCTTGGGAAGCTTGGTAGGTCGACAACTCTGCAGAAGTTCAAGAACGGCGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTAGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCGACAGATACAATTCACTATGCACACCGAGCTGGTCGAACTGGTCGGCTTGGTAGAAATGGCACAGTGCTAACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAATTGCAGAAGCAACTTGAAATACCGATAGAATGCTGTAATTTTGTCGAGGGAAATCTTGTTATCACCGAAGAAGAGACTACTCTAACCAGCGCTTCTTGA 1671 0.4237 MQSLVSAKFLLLVGESFPMRRALLNSRFAWFHSSVQCTSQNHSESLTLSSIGIKSEKIEIEPKIISESKKVKPLGLTSEVLKSNRKPFGIGDKKSVRVKEKQKIDNAPFAAKSFSELGIPDVLIERLGKEGFNVPTDVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLRGENREGDVDGGEAGKKSGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLTPEPVNLSPNSSANSSKPSKAVVESLPPALKHYYCVVRLQHKVDTLRKCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLQKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDTIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLQKQLEIPIECCNFVEGNLVITEEETTLTSAS* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3106 556 Pfam Helicase conserved C-terminal domain 399 505 IPR001650 -
Tpr7g3106 556 Gene3D - 82 346 IPR027417 -
Tpr7g3106 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 25 533 - -
Tpr7g3106 556 SMART ultradead3 131 363 IPR014001 -
Tpr7g3106 556 CDD DEADc 123 345 - -
Tpr7g3106 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 344 IPR014001 -
Tpr7g3106 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 25 533 - -
Tpr7g3106 556 SMART helicmild6 424 505 IPR001650 -
Tpr7g3106 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 525 IPR027417 -
Tpr7g3106 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Tpr7g3106 556 CDD SF2_C_DEAD 385 514 - -
Tpr7g3106 556 Pfam DEAD/DEAH box helicase 136 330 IPR011545 GO:0003676|GO:0005524
Tpr7g3106 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Tpr7g3106 556 Gene3D - 382 540 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3106 Tpr-Chr7 38408972 38412571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3106 113 539 Eukaryotic Initiation Factors Gene Family AT3G19760 25.404 1.59e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3106 - - gmx:100812968 812.757