Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3096 ATGACTGGCCACTCAATTACATCACGATCGAACCAAACGATGCAGCTTCCCTGTGACTATGATGGCCACTGCATGGTCTGTAAGCAAAATCCTCCCAACATTGAAATTTCACCATGTCGGACATGCGCCACTCCCTGGCACATCCTTTGTCTTCCAGTCCCTCCCACCACTTTCTTTGATTGGGACTGCCCAGACTGTTGTCAACCCCAACAAAACAACCATGCTCCGCCTCTAGCCGAAAACCTTATTTCTGCCATTCAAGCTATTCAATCTGATATTTCACTCACTGAGGTAGAAAAGGCAATAAAGCGCCAAAAACTTGTAGGTGGATCATCTAAACCACATTTAGATAAGAATAAAAGTAATGGCATGCTTGATATCTTTGATGGAACCTTAAATTGCTCCTTCTGTATGCAATTACTAGAGAGACCCATCACGACGCCTTGTGGGCATAACTTTTGCCTTAGGTGTTTTGAGAAGTGGATTGGAAAAGGAAAACATGTGTGTGCTAAATGTAGGAGCACAATTCCATCAAAGATTGCTAGTCATCCTCGTATTAACTCACAGCTAGCGATCGCAATTCGATTAGCAAAATTGGCGAGATCAGAGGGAATAAGAGAAAGCATAGACATTGCAACTAAGAATGCACCTTGCTTTATGCACAATGATGACCGTCCTAACACAGCATTCACTACAGAGCGAGCAAAGAAAGCTGGGAAGGCAAATGCATGTTGTGGTAAAATATTTGTGACAATTCCATCCGATCATTTTGGACCGATCCTTGCAGAGAATGATCCAATAAGGAATCGTGGTGTTGTTGTGGGTGATACATGGTCAGATAGGATGGAATGTAGACAATGGGGTGCTCATTTTCCTCACGTTGCTGGAATTGCTGGTCAGAGTAATCACGGCTCACAATCTGTTGCTCTTTCGGGAGGTTACATTGATGATGAAGATCATGGTGAATGGTTCCTTTACACTGGAAGTGGTGGAAGAGACCTTAGTGGAAACAAGCGCATAAACAAACAACATTCCTTTGATCAAACATTTGATTACATGAATCAGGCGTTGAGAATTAGTTGCCTTAAAGGGTATCCTGTTCGAGTTGTTAGGTCTCACAAGGAGAAATGTTCGTTTTATGCACCGGAAGTTGGAGTGCGATACGATGGTATTTATAGAATAGAGAAATGTTGGCGTAAGAATGGAATACATGGTCACAAAGTTTGTAGATACTTATTTGTGAGATGTGACAATGAGCCAGCCCCATGGACAAGTGATTTATATGGAGATCGCCCCCGTCCATTGCCTAAAATTAAAGAGTTGAAGGATGCAATTGATATAACTGAAAGGAAGGGTGTTCCGTCATGGGACTATGATGAGGAAAAAGGTTGTTGGTTGTGGAAGAAACCTCCACCAAAAAGTAAGAAAAAGGCGACCATTGTGAACCCTGTTGATGGAACAATAATCAGAGATTTTAAGCCAAAAACAAAGAAAGTGTCTTTAAAACTAAAAGAGAGGATTTTGAAAGAATTTGGTTGCAATATATGTCGCAAGGTGTTAGTTTTGCCTCTTACTACTCCTTGTGCTCACAACTTCTGCAAAACATGCTTGGAGGATGCCTTTTCTGGCCAAAGTTATATCAAGAAGAGAATTTATGAAAATGGACGCACTTTGCGATCATTGAAGAACATTATAAGATGCCCTTCGTGTTCTAATGATATTGCTGATTTTCTTCAAAATCCACAGGTTAACAGAGAAATGATGGATGTTATAGAATCACTTCAGCGGCAGACTGAACAGATGGATGGAAATTTTGAAGAATTAAGTGATGATAATGCTGCATGA 1845 0.4103 MTGHSITSRSNQTMQLPCDYDGHCMVCKQNPPNIEISPCRTCATPWHILCLPVPPTTFFDWDCPDCCQPQQNNHAPPLAENLISAIQAIQSDISLTEVEKAIKRQKLVGGSSKPHLDKNKSNGMLDIFDGTLNCSFCMQLLERPITTPCGHNFCLRCFEKWIGKGKHVCAKCRSTIPSKIASHPRINSQLAIAIRLAKLARSEGIRESIDIATKNAPCFMHNDDRPNTAFTTERAKKAGKANACCGKIFVTIPSDHFGPILAENDPIRNRGVVVGDTWSDRMECRQWGAHFPHVAGIAGQSNHGSQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRINKQHSFDQTFDYMNQALRISCLKGYPVRVVRSHKEKCSFYAPEVGVRYDGIYRIEKCWRKNGIHGHKVCRYLFVRCDNEPAPWTSDLYGDRPRPLPKIKELKDAIDITERKGVPSWDYDEEKGCWLWKKPPPKSKKKATIVNPVDGTIIRDFKPKTKKVSLKLKERILKEFGCNICRKVLVLPLTTPCAHNFCKTCLEDAFSGQSYIKKRIYENGRTLRSLKNIIRCPSCSNDIADFLQNPQVNREMMDVIESLQRQTEQMDGNFEELSDDNAA* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3096 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 613 IPR013083 -
Tpr7g3096 614 SUPERFAMILY PUA domain-like 241 435 IPR015947 -
Tpr7g3096 614 SMART G9a_1 262 419 IPR003105 -
Tpr7g3096 614 Pfam zinc finger of C3HC4-type, RING 134 172 - -
Tpr7g3096 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 199 IPR013083 -
Tpr7g3096 614 SUPERFAMILY RING/U-box 493 546 - -
Tpr7g3096 614 SUPERFAMILY RING/U-box 126 178 - -
Tpr7g3096 614 Pfam RING-type zinc-finger 513 568 IPR027370 -
Tpr7g3096 614 ProSiteProfiles YDG domain profile. 267 415 IPR003105 -
Tpr7g3096 614 ProSitePatterns Zinc finger RING-type signature. 528 537 IPR017907 -
Tpr7g3096 614 ProSiteProfiles Zinc finger RING-type profile. 134 173 IPR001841 -
Tpr7g3096 614 Pfam SAD/SRA domain 270 418 IPR003105 -
Tpr7g3096 614 SUPERFAMILY FYVE/PHD zinc finger 13 70 IPR011011 -
Tpr7g3096 614 ProSiteProfiles Zinc finger RING-type profile. 513 571 IPR001841 -
Tpr7g3096 614 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 12 613 - -
Tpr7g3096 614 SMART ring_2 134 172 IPR001841 -
Tpr7g3096 614 SMART ring_2 513 570 IPR001841 -
Tpr7g3096 614 Coils Coil 591 611 - -
Tpr7g3096 614 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 12 613 IPR045134 -
Tpr7g3096 614 Gene3D - 238 431 IPR036987 -
Tpr7g3096 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3096 Tpr-Chr7 38290513 38297647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3096 15 605 C2H2 Transcription Factor Family AT5G39550 57.119 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3096 K10638 - gmx:100781044 843.958