Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3084 ATGAGTTCTGATTTGTCGTCCGCCACTTCTGTTCTCCGTTGCACCGATGAACTTGTCAAGAAGTTCTTATGCCCGATTTGTGCGGAGATATATTTTGAGCCATGTACCACTCCTTGTGGACACAGTTTTTGCAAAGAGTGTTTGCAATCTTCCATGGCTATGTCTGCCACAGACCTAAATTGCCCTATATGCGGGGGATCAATAAGTAATGGATTATCCTACTGTGTGAATGTAGCTCTTTGGAACGCAGTTCAGTTCTTATTTCCTCAGGAAGTTAAATCGCGGAAAGTAACCGATGCCTTAAATAGATCGAAAAATTTAAGTGCACAACCATATAAAAATTCTACTCGTTCTTGGCCTCCATTGAATGGTGTTTTTTATTATATAAATCTATTGAATGATGGTTTAGATATTATAAGCCGTGTGATGTTAGGCTTGTTTGTTATTGCACTGCCTTACATGACATATGTTGTATTCGAGAAAGACTTTCGTTAA 495 0.3879 MSSDLSSATSVLRCTDELVKKFLCPICAEIYFEPCTTPCGHSFCKECLQSSMAMSATDLNCPICGGSISNGLSYCVNVALWNAVQFLFPQEVKSRKVTDALNRSKNLSAQPYKNSTRSWPPLNGVFYYINLLNDGLDIISRVMLGLFVIALPYMTYVVFEKDFR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3084 164 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Tpr7g3084 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 95 IPR013083 -
Tpr7g3084 164 SUPERFAMILY RING/U-box 16 89 - -
Tpr7g3084 164 ProSiteProfiles Zinc finger RING-type profile. 24 64 IPR001841 -
Tpr7g3084 164 SMART ring_2 24 64 IPR001841 -
Tpr7g3084 164 Pfam Zinc finger, C3HC4 type (RING finger) 24 64 - -
Tpr7g3084 164 PANTHER OS12G0267900 PROTEIN 4 117 - -
Tpr7g3084 164 PANTHER UNCHARACTERIZED 4 117 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3084 16 86 C2H2 Transcription Factor Family AT5G39550 36.842 4.58e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3084 - - mtr:MTR_1g093975 159.458