Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3080 ATGAACCCATTAACACTAGTGAAACGGATTCAACAAATCAATTCAAAAGAAGCTGCTTTAAACATCACCGAAGAAGCTTCGTGGCACACTAAATACAAAGATTCTGCTTATGTTTTTGTTGGTGGTATTCCCTTTGATCTCACTGAGGGTGATTTACTAGCTGTTTTTGCTGAATATGGGGAGGTTGTTGATGTTAATTTAGTTAGAGACAAAGGTACTGGCAAATCAAAGGGATTTGCTTTTATTGCATATGAAGATCAAAGAAGTACTAATCTTGCTGTTGATAATTTAAATGGAGCTCAGGTTTTAGGTAGAATTATTAGGGTGGATCATGTTGATAAGTATAAGAAGAAGGAAGAGGAAGATGAAGAGACCGAGCGGCAGAAAAGGGAGGCCCGTGGTGTTTGTCGAGCTTTCCAAAGAGGGGAATGTACTCGTGGAGCTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACTGGTTGGGGTGAGAATGGCAATGCAAAATGGGATAATGACAAATATGATGGTCCCAAGAAAGAAAGAAGATATGACAACAACCAATCAAATCGCATTCCAGAAACTAGAGACGTAGATTCACGCTCCATAGCCCATGGCAATGGGAGGGAATTAGACAACCAATCCAAGCGAAGTGATAGAAGAGAGGAAAATACCAGTAGAAGAGAAGCAAAGGGACCAAGAAGGCACGATGACGATGAATTTGAACATCGGTTAAGAGAAGATCGACATAGGAGAGAAGAAAAAAAATCAAGGGGTGGTTACGATGGTAGGGAACCTGAGCCAAGAGATAACAGAAGGGAAGACAGGAGGTCAACAAAGCGAGATGATATTGTGCTTGAGTCCAAGTCAAGAGATTCTGATGTAAGAGATGACAAAAGACCAAGTAGGCAGGATGTTGATGATTTACGAAGCAAGTCGAGTGAACATGGTAACAGGGAAGAGAGGAGATCAAGAAGGCACACTGATGATGAATCTGTGCCAAGGTCAAGAGAAGATCATGATAGGAAGCAAGATAACAGATCGTATAGAAATGATACTGATCGATCAGAATCTAAAGGAAGATACGAATCTGAACGAAGAGAAGAAAAACGGTCCAGAAGGTAA 1131 0.4085 MNPLTLVKRIQQINSKEAALNITEEASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAEYGEVVDVNLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGENGNAKWDNDKYDGPKKERRYDNNQSNRIPETRDVDSRSIAHGNGRELDNQSKRSDRREENTSRREAKGPRRHDDDEFEHRLREDRHRREEKKSRGGYDGREPEPRDNRREDRRSTKRDDIVLESKSRDSDVRDDKRPSRQDVDDLRSKSSEHGNREERRSRRHTDDESVPRSREDHDRKQDNRSYRNDTDRSESKGRYESERREEKRSRR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3080 376 Gene3D - 133 196 - -
Tpr7g3080 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Tpr7g3080 376 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Tpr7g3080 376 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 285 - -
Tpr7g3080 376 MobiDBLite consensus disorder prediction 171 376 - -
Tpr7g3080 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Tpr7g3080 376 Gene3D - 26 132 IPR012677 -
Tpr7g3080 376 Coils Coil 115 135 - -
Tpr7g3080 376 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Tpr7g3080 376 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 285 - -
Tpr7g3080 376 SMART rrm1_1 37 110 IPR000504 GO:0003723
Tpr7g3080 376 SUPERFAMILY RNA-binding domain, RBD 26 116 IPR035979 GO:0003676
Tpr7g3080 376 MobiDBLite consensus disorder prediction 161 376 - -
Tpr7g3080 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Tpr7g3080 376 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Tpr7g3080 376 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3080 Tpr-Chr7 38054753 38060553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3080 13 109 Eukaryotic Initiation Factors Gene Family AT2G36660 27.835 2.57e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3080 K13107 - gmx:100814734 422.165