Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3063 ATGACGACGACGGCTATCACGGCGGCGGAACCCGACCTAAAAACATACTGGTGCCACGAATGCGACATGAGCGTCTCTCTAACTTCTTCCTCAACTCCTTCACCTCTCCTCTGTCCTCATTGTCACACTCACTTCCTCGAACTCATGGACTCACCTTTCTCCCAAAACGACGCCGAATCAACTACTTCCTTATTCGATTTCCAAGACGCACTTTTACTACTCACACCTCCTTCAACCAAACAACGCAATGAAATACTAATCCCTATAATAACCGTCACGCAAACTCTTCTTACTCTTCTCGATCCAAACGGTGTCGTTTTATGTGCAGTTTGTAAAGAAGCGATTTATGTCGATGAAGAAGCGAAACAGCTTCCTTGTGATCATCTTTATCATAACGATTGTATTACTCCGTGGCTTCTTCTTCGATCTTCTTGTCCTCTCTGTCGGTTCCGAATCACGGAGCACGAAGTGGATGAGAATGATGAAGATGATGATGTCATGATGAGGCAGATGGTTTTGCGGTTGTCGGAGTTGTCTGAGGATGATTTTTATGGATTGAGAATTACTCTTGATCACATTGCTTCGAGGCATGCTCTGCTTCATTCTAATGCTTCTGGTGCTGCTCAGAATCTGGATGCAGATAGTGAACTTAGTGCTGGTGGTGTAGATGGTGAATCTTGA 681 0.4479 MTTTAITAAEPDLKTYWCHECDMSVSLTSSSTPSPLLCPHCHTHFLELMDSPFSQNDAESTTSLFDFQDALLLLTPPSTKQRNEILIPIITVTQTLLTLLDPNGVVLCAVCKEAIYVDEEAKQLPCDHLYHNDCITPWLLLRSSCPLCRFRITEHEVDENDEDDDVMMRQMVLRLSELSEDDFYGLRITLDHIASRHALLHSNASGAAQNLDADSELSAGGVDGES* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3063 226 Pfam zinc-ribbon 15 49 IPR039525 GO:0061630
Tpr7g3063 226 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 10 53 - -
Tpr7g3063 226 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 74 159 - -
Tpr7g3063 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 167 IPR013083 -
Tpr7g3063 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 53 - -
Tpr7g3063 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 159 - -
Tpr7g3063 226 SMART ring_2 108 148 IPR001841 -
Tpr7g3063 226 Pfam Ring finger domain 108 149 IPR001841 -
Tpr7g3063 226 SUPERFAMILY RING/U-box 107 155 - -
Tpr7g3063 226 ProSiteProfiles Zinc finger RING-type profile. 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3063 Tpr-Chr7 37840149 37843593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3063 9 66 C3H Transcription Factor Family AT3G60080 48.387 5.50e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3063 K11982 - gmx:100782164 231.491