Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3050 ATGGAGCTTGATTTAAATGAGAAGCCTGAAATTAAAGAGCAAATGAAACGGCTTGAAGCCATTTTCAAGGCAAACCAGACTCAGAAGCGGCAAAAATGTTACACTCCAATTCAGATAACTAATTTTGCAGGAGAATTGTTAACAAGAGCTGATAATGTTCAAGATGATGAAAGCAAGGTGACCAAGGAAGAGGTTGAAGGAGGGAAATCGGAATGTGAGAAAACACGTAAAAGGAAGGCTTCCTGTTTAGTTGCGAAGGCATTGGGGATGGAAACATCCACAGACGGCGTTGCAGGCCGCACTAGAAACTTCTTTGATTGTAATATATGTTTGGACACGGCGAATGATGCTGTATTGACTTGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATCAGTTGCCATATGCTTATTCAAATGCCAAAGAGTGTCCTGTGTGTGCAGGAGAAGTCGTTGACACCGATGTCATACCAGTATATGGCAACGGAAGGGTCGATGATAGTGGTCAGTTTGAATTGAAAGAATCTGGTTTAAGATTTCCTGGTCGACCGCAGGCACCTAGAGTTGAGAGTACTAGGCAGCGTCGCAGAAGACGCGCTGTTACTTCTACAAACCATGATTTGTCTTTGTTTGGTAACTTTGGCGGATTGGAAGAGCCTGATCCGTTGCAACTCCCGATTATTTCTAATGATTGA 696 0.431 MELDLNEKPEIKEQMKRLEAIFKANQTQKRQKCYTPIQITNFAGELLTRADNVQDDESKVTKEEVEGGKSECEKTRKRKASCLVAKALGMETSTDGVAGRTRNFFDCNICLDTANDAVLTCCGHLFCWECFYQLPYAYSNAKECPVCAGEVVDTDVIPVYGNGRVDDSGQFELKESGLRFPGRPQAPRVESTRQRRRRRAVTSTNHDLSLFGNFGGLEEPDPLQLPIISND* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3050 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 202 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr7g3050 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 161 IPR013083 -
Tpr7g3050 231 ProSiteProfiles Zinc finger RING-type profile. 107 147 IPR001841 -
Tpr7g3050 231 Pfam Zinc finger, C3HC4 type (RING finger) 106 151 - -
Tpr7g3050 231 SUPERFAMILY RING/U-box 99 157 - -
Tpr7g3050 231 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 10 202 - -
Tpr7g3050 231 SMART ring_2 107 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3050 Tpr-Chr7 37711127 37713072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3050 98 202 C3H Transcription Factor Family AT3G58030 50.000 3.11e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3050 K10666 - gmx:100794016 183.726