Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3001 ATGGCTTCATCTAACAGACACTGGCCAAGTATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAACATGACATCAACTCTTCTCTAATCTCTTCTTCTGCTTGTCACAGAACTCCTTACTCAGGTGAGGAAAGAAGTGCTGAACCAAAACCGAGGTGGAATCCGAAACCGGAACAAATCCGGATACTTGAAGCTATCTTCAACTCTGGCATGGTGAATCCACCAAGAGAGGAAATAAGGAAAATCAGAGCACAGTTACAAGAATATGGACAAGTTGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAACATAAGCTTCGTCATCTTCAAAACCAGAACTCAAAAAACCAGAACCAGAACCAAAACCAGAACCTGCAGAATCAGGAACATCATGCACCACAACAAAACTCTGTTTCATCACTTTCTCAAATCACTACTGCACCTTCATCTTCATCTTCTTCCTCTGAGAAATCACCACCAAAAGAATTAATACCTTCTAAGGTATTTTCTCTTGGTTTCACTAACATCAATGATGTTGTGCCTAATTCTCCAACTGCTTCTGTGAATCAGAACTATTTTCATCCTCAAAATGAAACCAATCTTCTTCCAACACCACAAGTAACTGCACCTACTGAAACTTTCTTCTTCCCAATGCAAAATCATGTACTACCTGTTACTAATAATGTTACATCACAATCACAAGGGTTTTGTTTCTCTGAACTTTCTAATATGGTTCATCATCAGCCACAACAAAACAACACTGCTCATTGCACTGCTGGTATTCTTCTTAGTGAGATCATGAACAACCATGGTGCTACTAATTCCTCAAAGAAAGAACAAGTTCATCATGACAAGAATGTTAAGATAATGCACCAAACCCCACATTTTAACTTCTGTTTTGCACCCTCAACTACTACTGTTGCACCTCCCACCACTTCCTCCACCATCACTGTTCCATCCCCTATCATTTCTCAACTTCAAGGCATTGGAGAAGTTGGTGTTGCTGCAAAATCAATGGTGTTCATCAATGATGTGGCATTTGAGGTTGCATCTGGACCTTTCAATGTTCGTCAAGCATTTGGTGATGATGCTATTCTCATCAATTCAACTGGTCAACCTGTTTTAACAAACCAATGGGGTGTCACTCTTCATTCACTTCAACATGGTGCATGTTATTATGTTGTTATCTGA 1215 0.3951 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSACHRTPYSGEERSAEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNSKNQNQNQNQNLQNQEHHAPQQNSVSSLSQITTAPSSSSSSSEKSPPKELIPSKVFSLGFTNINDVVPNSPTASVNQNYFHPQNETNLLPTPQVTAPTETFFFPMQNHVLPVTNNVTSQSQGFCFSELSNMVHHQPQQNNTAHCTAGILLSEIMNNHGATNSSKKEQVHHDKNVKIMHQTPHFNFCFAPSTTTVAPPTTSSTITVPSPIISQLQGIGEVGVAAKSMVFINDVAFEVASGPFNVRQAFGDDAILINSTGQPVLTNQWGVTLHSLQHGACYYVVI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3001 404 MobiDBLite consensus disorder prediction 110 170 - -
Tpr7g3001 404 CDD homeodomain 51 113 IPR001356 GO:0003677
Tpr7g3001 404 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Tpr7g3001 404 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
Tpr7g3001 404 MobiDBLite consensus disorder prediction 36 58 - -
Tpr7g3001 404 Coils Coil 114 139 - -
Tpr7g3001 404 SMART HOX_1 50 117 IPR001356 GO:0003677
Tpr7g3001 404 Gene3D - 52 119 - -
Tpr7g3001 404 MobiDBLite consensus disorder prediction 43 58 - -
Tpr7g3001 404 MobiDBLite consensus disorder prediction 119 168 - -
Tpr7g3001 404 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 403 IPR044557 GO:0003700|GO:0050793
Tpr7g3001 404 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3001 Tpr-Chr7 37259489 37262522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3001 220 403 Wox Gene Family AT5G45980 32.990 3.23e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr7g3001 Homeodomain 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3001 - - mtr:MTR_2g015000 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3001 7 37259489 37262522 Tpr7g3001 7 37259489 37262522 ECH