Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2963 ATGGATTTTAGCTCAGATATTTCAAGGGTAGTTTTCAATGCTACTTCATATAGCTTTGGTGCTTCAAATGAGATTTCAAGAGGTGGATTTGTATCATCAAACTCATTGGTTTTGGATAGTGAGAAAGGAGAATTAGTGAAGTCTCCTCCAATAATTGGAGACAAAAAGATTTGTGATGCTAACAAAACTTTAGTGGCTTTGAAGAATCATAGAGAAGCAGAGAGGAGAAGAAGGAACAAAATTAATTGTCATCTTGCTAAACTTCGTGGACTTGTGCCTTCCTCTACAAAGATGGACAAAGCAACCCTACTAGCAGAAGTAATTAGGCAAGTAAAGGAATTGAAAAATAATGCTAATCAAGCAAGCAAAGGTTATTCAATCCCAATAGATGGTGATGAAGTGAAAGTTGAAGTTGAATCATGTGAAGATGGTGGAGTAGATGGATCAATTTTTTACAAAGCATCTATCTGCTGTGATTACCAACCAGAACTTCTTTCTGATCTAAAACAAACTCTTGATACCCTTCAACTACAATTGGTAAGGGCAGAATTGTCAACTTTGGGAGACAGGGTTAAGAATGAATTTGTCTACAATTGTTGCAAAGTAGACATTTATAATATTGAGCTATGTCAACTTATTGCAAGTAATGTTCACCAGGCACTTAGTTCTGTATTGGATAAGGCTTCTGCCTCAATGGATTACTCATTAAGGGCACCACATCCTTGCAATCAGCTGCAGCAGACATCTACGTTGTCATGCAACCATGATTTTTGCTCTTGTTGA 783 0.3691 MDFSSDISRVVFNATSYSFGASNEISRGGFVSSNSLVLDSEKGELVKSPPIIGDKKICDANKTLVALKNHREAERRRRNKINCHLAKLRGLVPSSTKMDKATLLAEVIRQVKELKNNANQASKGYSIPIDGDEVKVEVESCEDGGVDGSIFYKASICCDYQPELLSDLKQTLDTLQLQLVRAELSTLGDRVKNEFVYNCCKVDIYNIELCQLIASNVHQALSSVLDKASASMDYSLRAPHPCNQLQQTSTLSCNHDFCSC* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2963 260 SMART finulus 71 120 IPR011598 GO:0046983
Tpr7g2963 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 124 IPR036638 GO:0046983
Tpr7g2963 260 Coils Coil 104 124 - -
Tpr7g2963 260 PANTHER TRANSCRIPTION FACTOR BHLH30 8 252 IPR045847 GO:0003700|GO:0006355
Tpr7g2963 260 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Tpr7g2963 260 CDD bHLH_AtAIG1_like 62 139 - -
Tpr7g2963 260 Coils Coil 165 185 - -
Tpr7g2963 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Tpr7g2963 260 Gene3D - 65 124 IPR036638 GO:0046983
Tpr7g2963 260 PANTHER DNA BINDING PROTEIN-LIKE 8 252 - -
Tpr7g2963 260 CDD ACT_UUR-ACR-like 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2963 Tpr-Chr7 36926548 36930001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2963 68 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.385 2.47e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g2963 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2963 - - mtr:MTR_2g015890 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2963 7 36926548 36930001 Tpr7g2963 7 36926548 36930001 ECH