Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2935 ATGGGTCTTGATGAGAGCAAAAGTAGTGTTGAGGTGTTAGATTCAGTTCATGAAGTGATTGATGAGAATTTAAGTAATTTGGTTGAAGGGGTTGGAGAAGTTGGAACTTCAAGAGAGGTGAGTAAGGATTTAGGATCCAATAAGGAGCTAAAAGAAACGCCTGAGGAAGTTAAGGTTCAGGAAAAGTGCGATGAATTGTCCGCAGTTGATCAAGGAACTAGTTATAGTTCAAACAATTTGGTTAATCAGGGTGTGGTTGAGACAGTGGTTGTAATAGATGCTGTTAATGTTCAGACTGAGGGTATGAAATTGGAAGCAAAAGCTGATGAATCAGGGCTTAGTTTGGTTTCAATGAAAGCGCCGAAAGGGGTGTGTGAAACTGATAAAGATTCATGTGTGATTGATATGAAGTGTAGTAGCCACAAAGGATTTTATGAGGTTTCACAAGGTGAAAAGATTTGTAGGATTTGTCATCTGACTTTCGGACAGTCATCGGATGCAATAATTGTTGAAAATGGTAGTGCTACAAGTGGTGATTTTATTCAACTCGGTTGTTCGTGTAAAGATGAGCTCGGCATTGCACATATTCATTGTGCTGAAGTGTGGTTCAAGCTCAAGGGAAACAGGTTATGCGAAATATGTGGCGAGACTGCAAAAAATGTTTCTGTTGTTGCTAATAATGGATTTATGGAAGGGTGGAATGATAGAAGATTCATGGACAATGAAGGTAACTCATCCCAGCACAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAATTTCTTGATGGCGTGCCTGGTAATAGCTTTCATTCTGCCATGGTTTTTTCATGTAAATATGTTCTAG 849 0.3981 MGLDESKSSVEVLDSVHEVIDENLSNLVEGVGEVGTSREVSKDLGSNKELKETPEEVKVQEKCDELSAVDQGTSYSSNNLVNQGVVETVVVIDAVNVQTEGMKLEAKADESGLSLVSMKAPKGVCETDKDSCVIDMKCSSHKGFYEVSQGEKICRICHLTFGQSSDAIIVENGSATSGDFIQLGCSCKDELGIAHIHCAEVWFKLKGNRLCEICGETAKNVSVVANNGFMEGWNDRRFMDNEGNSSQHRFGGCWRGQPFCNFLMACLVIAFILPWFFHVNMF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2935 282 SMART ringv_2 153 215 IPR011016 GO:0008270
Tpr7g2935 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 55 282 - -
Tpr7g2935 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Tpr7g2935 282 SUPERFAMILY RING/U-box 150 217 - -
Tpr7g2935 282 PANTHER ZINC FINGER, RING-CH-TYPE 55 282 - -
Tpr7g2935 282 Pfam RING-variant domain 154 214 IPR011016 GO:0008270
Tpr7g2935 282 MobiDBLite consensus disorder prediction 35 56 - -
Tpr7g2935 282 ProSiteProfiles Zinc finger RING-CH-type profile. 146 221 IPR011016 GO:0008270
Tpr7g2935 282 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2935 Tpr-Chr7 36617717 36620114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2935 134 281 C3H Transcription Factor Family AT5G05830 40.132 1.42e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2935 - - gmx:100791720 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2935 7 36617717 36620114 Tpr7g2935 7 36617717 36620114 ECH
Tpr3g1161 3 10495795 10498322 Tpr7g2935 7 36617717 36620114 PCT