Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2906 ATGGCTTCAGGGGCAATTTTCTCGTCGCTGCGGCGGCGAAGATCACCGACGTTGGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGACGTTGCTTTGGTTCAGACTCTTGTAACGGTGGTGAACGAGCTTGTGTGTTGTTTTTCAAAGCGTTCTTTTTTCTTTCAGAGGAAAAATACTCGTTCTTTGGTTAGAAAAATTGAGGTTTTTCAAGTTCTTTTGGAGTATTTGAATGATTCGGGTTCGTGTTCGGGTTCTGGTTTTCCACCTACAGCTTTGCTTTGTTTGAAGGAGCTTTATTTGTTGCTGTATAGGTCCAAGATTCTTCTTGATTACTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAGATATCGACTCTTTTGGATGTTTTTCCTGTTAAGGATGTTGGTTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTTTTGTTGAAGCAATCAAGGAGGGCTAAGCTATTTATAGATATGGAAGATGATGCTCTTAGGATTCGATTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCTGATTCGGCCGAATTGCGTTCTTTTTATGTTGATAAGTTGCAGGTTATTGATGCTGCTAGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGATATTGAGCCTACAATTTCGGTGCTTAAAGGGTTTGTAGCTATGACTCGGTATTGTAGGTTTTTGATTTTCGGATTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAGAATCCTAAGAAGGGTTTGATTACTCAAGAGATTGCTGATACATTTTTAACTGTTCCAAAGGACTTTTGTTGTCCGATATCATTGGATTTGATGAGAGACCCGGTGATTATTTCCACGGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCGAAAACAGGTCAAACGCTTGCTCACACTCGTCTTGTCCCAAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGTAGTGCTCACGGAATCCCCCTTGATCCACCAGAAGTTATGGATGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCCGCCCTCGAAGCCAATAGAGCCACTGCAAATCTTCTCATTCAACAGCTAGCTAATGGATCACAATCTGGAAAGACTATTGCTGCTCGGGAGATTCGGTTGCTTGCTAAAACCGGCAGAGAAAATCGTGCCTTCCTTGCAGAAGCGGGAGCGATTCCTTATCTTCGGAACTTATTGGCGTCGCCTAGTTCTGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAACTTATCCATTTACGACAAGAACAAAAGCCGCATCATGGATGAGACAGGTTGTCTCGGATCAATTGTCGCCGTGTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAACGCTGCTGCAACATTGTTCAGCTTATCAGCCGTCCATGACTATAAAAAGATAATCGCGGATGAGACCGGAGCCGTTGAAGCCTTGGCAGGGCTTTTGCAAGATGGGACTCCAAGAGGAAAGAAAGATGCAGTAACAGCTTTGTTCAATCTTTCGACACACACTGAGAATTGTGTTAGAATGATTGAGGCAGGAGCAGTAACAGCTCTAGTTGAGGCTTTGGGGAACGAAGGAGTTGCTGAGGAAGCAGCAGGTGCACTAGCCTTGATCGTCCGACAGCCTTTTGGAGCCAAAGCGGTAGTCAGTCAGGACGAGGCAGTAGCAGGATTGATAGGAATGATGCGTTGTGGAACACCACGGGGCAAAGAGAACGCAGTCGCAGCATTGCTCGAGTTATGTAGGAGTGGAGGTTCAGCTGCAACCGAAAGGGTGGTTAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTACTATTTACCGGGACAAAGCGAGCAAGACGAAAAGCCGCGTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTTTACATTTTGGCGGATTAGGTGTAGGCTATGCATATGCTAGCAATTCAGCTCAAACTAGGGATTCAAGCTTTGTTTCGGGTGATGTTTCAGTACCTATGTCCATCTCTGTACCTGTATTATAG 2166 0.4446 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVCCFSKRSFFFQRKNTRSLVRKIEVFQVLLEYLNDSGSCSGSGFPPTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLLKQSRRAKLFIDMEDDALRIRFFSFLDEFENGRIPDSAELRSFYVDKLQVIDAASCRTEIEALEEQIVNHEGDIEPTISVLKGFVAMTRYCRFLIFGFEEDELDLENGSQKKNPKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCSAHGIPLDPPEVMDAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRNLLASPSSVAQENSVTALLNLSIYDKNKSRIMDETGCLGSIVAVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVEALGNEGVAEEAAGALALIVRQPFGAKAVVSQDEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHFGGLGVGYAYASNSAQTRDSSFVSGDVSVPMSISVPVL* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2906 721 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Tpr7g2906 721 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Tpr7g2906 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 366 IPR013083 -
Tpr7g2906 721 SUPERFAMILY RING/U-box 281 366 - -
Tpr7g2906 721 Gene3D - 396 520 IPR011989 -
Tpr7g2906 721 Gene3D - 521 676 IPR011989 -
Tpr7g2906 721 PANTHER U BOX DOMAIN-CONTAINING 12 702 - -
Tpr7g2906 721 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Tpr7g2906 721 SUPERFAMILY ARM repeat 397 674 IPR016024 -
Tpr7g2906 721 SMART arm_5 591 632 IPR000225 GO:0005515
Tpr7g2906 721 SMART arm_5 511 551 IPR000225 GO:0005515
Tpr7g2906 721 SMART arm_5 426 466 IPR000225 GO:0005515
Tpr7g2906 721 SMART arm_5 552 590 IPR000225 GO:0005515
Tpr7g2906 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Tpr7g2906 721 Coils Coil 216 236 - -
Tpr7g2906 721 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Tpr7g2906 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Tpr7g2906 721 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 702 - -
Tpr7g2906 721 CDD RING-Ubox_PUB 297 339 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2906 Tpr-Chr7 36347681 36350709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2906 1 721 U-box Gene Family AT1G29340 69.116 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2906 - - mtr:MTR_2g018010 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2906 7 36347681 36350709 Tpr7g2906 7 36347681 36350709 ECH