Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2886 ATGAGATCGAGTTGCAATGGGTGTCGCGCACTTCGTAGAGGTTGCAGTGAAAATTGTATCATCAAGCCTTGCCTTGAGTGGATCCGTTGCCCCGAAACTCAAGCCAGGGTCACCCTCTTCCTTGCCAAGTTCTATGGCCGAACCGGTTTGCTCAACCTCCTTGCTAATGCTACCAACAAAAATTCCATAGCTGTGTTCAAATCATTGTTGTACGAGGCTTCAGGTAGATTGGCGAATCCCACACATGGAGCACTCGGTTTATTGCTCACTGGAGAATGGAGCCGATGTGAAGCTGCAGTTGAAGCCGTGCTGACTGGATCAAATATTAACGTTGTTACAGTTGTTGATGGACAAACATCACCATGTACAGGCATTGTTTTGAAATCAGATTTGGAGAATGGCAACATGAAAACTGCAGAAGCTTCATCGGTGATTGAGACAGAGCCAAATGGAATTGCTGAAACTCACTCTTGA 474 0.4599 MRSSCNGCRALRRGCSENCIIKPCLEWIRCPETQARVTLFLAKFYGRTGLLNLLANATNKNSIAVFKSLLYEASGRLANPTHGALGLLLTGEWSRCEAAVEAVLTGSNINVVTVVDGQTSPCTGIVLKSDLENGNMKTAEASSVIETEPNGIAETHS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2886 157 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tpr7g2886 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 122 - -
Tpr7g2886 157 PANTHER LOB DOMAIN PROTEIN 1 122 - -
Tpr7g2886 157 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2886 Tpr-Chr7 36182811 36183782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2886 1 121 AS2 family AT1G67100 56.452 6.62e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr7g2886 LOB 4.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2886 - - mtr:MTR_1g110840 189.119