Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2885 ATGGCTTTTCAAAATCAATCCATGTCAGATTCTCCACAAAGAAAGATAGGAAGGGGAAAGATTGAGATCAAAAGGATCGAAAACACGACGAATCGCCAAGTAACTTTCTGCAAACGAAGAAATGGCTTACTCAAAAAAGCTTATGAATTATCTGTTCTTTGTGATGCAGAAGTTGCTCTAATAGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTGAAAGCAACTATTGAAAGGTACAAAAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGACAAATTGCGTGTGCAAATCAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGAACTGAAAAACTTGGAGTCTAAGTTAGAAAAAGGAATAAGTAGGATTCGTTCCAAAAAGAACGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAAAGGGAGATAGACTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCATCATAATCTAAATATTAATATGAGTATGTTACCTGGAGGCACAAACTATGAATCAATGCAGTCTCATGCTCAGCAGCAGCAATATGATTCTCGTGGATACTTTCAAGTGTCTGGATTACAATCAAGTAGTCAGTATGGAAGACAAGACCACATGTCCCTTCAATTAGTTTGA 750 0.3867 MAFQNQSMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNLNINMSMLPGGTNYESMQSHAQQQQYDSRGYFQVSGLQSSSQYGRQDHMSLQLV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2885 249 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g2885 249 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Tpr7g2885 249 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Tpr7g2885 249 Coils Coil 102 129 - -
Tpr7g2885 249 PANTHER AGAMOUSB 10 243 - -
Tpr7g2885 249 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Tpr7g2885 249 Coils Coil 179 199 - -
Tpr7g2885 249 Coils Coil 139 159 - -
Tpr7g2885 249 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Tpr7g2885 249 PANTHER MADS BOX PROTEIN 10 243 - -
Tpr7g2885 249 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Tpr7g2885 249 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Tpr7g2885 249 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Tpr7g2885 249 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Tpr7g2885 249 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g2885 249 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Tpr7g2885 249 MobiDBLite consensus disorder prediction 1 22 - -
Tpr7g2885 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2885 Tpr-Chr7 36161512 36169566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2885 14 249 MADS-box Gene Family AT3G58780 67.917 9.79e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr7g2885 K-box 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2885 K09264 - gmx:732595 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2885 7 36161512 36169566 Tpr7g2885 7 36161512 36169566 ECH
Tpr3g1116 3 10172320 10177892 Tpr7g2885 7 36161512 36169566 PCT