Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2849 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGCGAGTCCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAGTTGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACTAACAAGGAAGTGGATGGTCATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTGTGTGTCAACTTCATAATTTGACTATGCATGCTGATGTGGAGACTGATGAAGTGTATGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGAACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAACCACCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGGTCAACCTAAAAGACATCTACTTACAACTGGGTGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAACGACAAGAACCAATTACTTCTTGGCATCCGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTCAAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCTTTAGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTTTTTGAAACAGAAGAGTCTAGTGTGCGACGATACATGGGTACAATAACGGGCATTTGTGACCTAGATTCTGCCCGGTGGCCAAACTCGCATTGGCGATCTGTAAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCACCATTCCCCCTTAGGCTTAAAAGACCGTGGCCTCCTGGATTGCCTTCGTTCAATGGCATGAAAGATGACGATTTTGGCATGAATTCTCCTTTGATGTGGCTCCGAGACACCGATAGAGGTCTTCCATCTCTTAATTTTCAAGGGATTGGTCTTAATCCTTGGATGCAACCAAGGTTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGACATGAGGAGTGTCGATCCTTCCAAACAGCATCCTGGTTCCTTACTTCAATTTCAGCAACCGCAGAACTTTCCAAACCGGACTGCTGCTTTAATGCAGGCGCAGATGTTGCAACAGTCGCAGTCTCAACAGGCTTTTCAAAATAATAATCCGGACAATCAAAACCTGTCACAATCTCAGCTACAAAATCAGAGTCATTCTCAGCAGCATCTACAGCATCAGCACTCGTTCAATAATCAACTCCATAATCATAATCAGCAGCAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCAGAACTCTGGTTCGGTCTCTACAATGTCTCAGTTTGTTTCAGCGCCACAACCTCAATCACCACCACCTATGCAGGCTCTCTCTTCACTATGCCATCAGCAGAGTTTTTCTGATTCAAATGTGAACTCTTCAACTACTATTGTTTCTTCTTTGCACAGTATCATGGGTTCGTTTCCGCAGGATGAAACATCGCACCTTATGAGCCTACCTAGAACAAGTTCTTGGGTTCCTGTTCAAAATTCAACCGGTTGGCCCTCCAAGCGTGTTGCGGTGGATCCACTCCTTTCTTCGGGAACATCTCAATGTATTCTGCCTCAGGTGGAACAGTTAGGAAATCCACAGAATACCGTATCTCAAAATGCTATTACATTGCCACCGTTTCCTGGTAGGGAGTGCACAATTGATCAAGAAGGGAGCAATGATCAGCAAAGTAATCTTTTATTTGGTGTCAATATAGATCCCACGTCTCTTCTAATGCATAACGGGATGTCGAACTTCAAGGGGATTGGTGGCGGCAACAGCGACTCGTCAACCATGCCCTATCATCAATCTTCTAATTACATGAACACCGCAGGTACCGATTCTTCATTGAATCATGGAGTAGCACCTAGTATTGGTGAATCCGGTTTCTTGCATACCCCGGAAACCGGGGAGCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAGTTCAGCAGCTACAATGAGCTGCGTAGTGAGCTCGCCCGAATGTTTGGACTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGCGATGGCCCTTGGCCCGAATTCGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGAAACACTGGCCTTGGGCTTTTGAACTCGGTTCCAATTCAAAGGCTCTCAAATAGCATCTGTGATGACTATGTGAGCCGTCAAGATTCAAGAAATCTTAGCAGCGGAATAACAACCGTGGGATCTCTAGACTACTGA 2718 0.4581 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDGHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMKDDDFGMNSPLMWLRDTDRGLPSLNFQGIGLNPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPSKQHPGSLLQFQQPQNFPNRTAALMQAQMLQQSQSQQAFQNNNPDNQNLSQSQLQNQSHSQQHLQHQHSFNNQLHNHNQQQQQTQQQVVDNQQNSGSVSTMSQFVSAPQPQSPPPMQALSSLCHQQSFSDSNVNSSTTIVSSLHSIMGSFPQDETSHLMSLPRTSSWVPVQNSTGWPSKRVAVDPLLSSGTSQCILPQVEQLGNPQNTVSQNAITLPPFPGRECTIDQEGSNDQQSNLLFGVNIDPTSLLMHNGMSNFKGIGGGNSDSSTMPYHQSSNYMNTAGTDSSLNHGVAPSIGESGFLHTPETGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2849 905 PANTHER AUXIN RESPONSE FACTOR 1 885 - -
Tpr7g2849 905 SUPERFAMILY CAD & PB1 domains 771 847 - -
Tpr7g2849 905 SMART B3_2 127 229 IPR003340 GO:0003677
Tpr7g2849 905 Gene3D - 291 363 - -
Tpr7g2849 905 Gene3D - 769 861 - -
Tpr7g2849 905 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Tpr7g2849 905 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr7g2849 905 Gene3D - 125 228 IPR015300 -
Tpr7g2849 905 MobiDBLite consensus disorder prediction 500 570 - -
Tpr7g2849 905 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Tpr7g2849 905 CDD B3_DNA 126 227 IPR003340 GO:0003677
Tpr7g2849 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 885 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr7g2849 905 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Tpr7g2849 905 ProSiteProfiles PB1 domain profile. 772 856 IPR000270 GO:0005515
Tpr7g2849 905 Pfam AUX/IAA family 765 857 IPR033389 -
Tpr7g2849 905 MobiDBLite consensus disorder prediction 500 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2849 Tpr-Chr7 35831008 35837291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2849 1 483 B3 DNA Binding Superfamily AT1G30330 86.475 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr7g2849 AUX_IAA 4.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2849 - - gmx:100798719 1468.37