Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2839 ATGGAAAATCTTGAAAGAATGGGTAGAGAACTCAAATGTCCGATCTGTTTGGGTTTAATTCATTCCGCTGTTTCACTCACCTGCAATCATCTTTTCTGCAACTCTTGTATAATTAAGTCAATGAAATCTGCATTTTCTTGTCCGGTTTGTAAAATACCCTTCGCTCGTCGAGAGATTCGTCCTGCTCCTCAAATTGACAGCTTGGTCACTATCTACAAAAACATGGAAGCTGCTTCTGCAATTAATTTATTTGGAACTCAAAATCCACCTGCTACCAAATCACCAGATGAGGACAAGCAATGTAAAGGGGATTATAAGTCTGGTGAGAAAGGAACTGGTGGGACTCATGAAAATCATCCTGAGGAGGAAATAACCCCCAAAAGAAAGAAGTTGGCAAAGAAGCTTCAGGCCAGCACAAAAAGTTCGGCTTCTAACCGTGCAGAGCCTTCTTTTCCGGCTAAGAAAAGGGTTCAGGTGCCACAAGATATCCTTTCAGAAACTCCAATGAGGAATTTGAAATCAGGAGGCTCTGTTAGTCTAATTAACAAAGAGGGAACACAAAAGGCTTCAACCAAGGGAAATAAAATGGAAATTCAAAGTGAAAAAGGTGATCAGGTGAAAGAACCATTCTTTTGGTTAAGAGAGGAGAAGGATGGTGAAATGTTAAGTCAACAGTCTAGCGAGGATTTAATTATTGAGGGTTCTTCACCAGTTCTTCCTTCATTCAGTGATCTCCAAGATGCTAATGATGACAGCCCTTCAAAACAAGCTCCATCAGACGAGGTGCAAAACAAACCATCTTTTGATTTATTTGATAGTGAGATGTTTGAATGGACGCAAAAGCCATGCTCACCCGAATTATTTTCAAGTCCCATCAAAATGCAGGTTGAGGATACTTTTGAGAATGATGAAAATATAGAGGAATTAGTGGCAGGGACTCAGGAGCATCAGTTAAGTGCTGATGCTTACAATATAAACTTTGAGAATCCCGTAGGCAATCAATTGGCTGATGTGTTGCCACAAGGTGTCTCCTCTCAAATAAGTTCTGATGATCTAAATGGAAAAAAGAAGACTACAAAGAGAAGTAGGAAGGCTAGAGAAAAATCTAAGGAAGACAAGATTTGGGAACAAAAATGTCAAAATGATGAAATGAATTTGGATTCAAATATAAAATCAAAAGATATTGAGGATCAATCATTGGACAACAAGCACAGAGCTTCTAATCTGAAAAAGTCTAATAGAAAGGGCAAGAAGGTTTCTTTCATTATTAGTACAGATTCAACACCACAAACCGCTTGTACAGTCTCCAATATATCAGGAGTTCAAAGCAAAGGTAGAAGAATGACCGCTAAGAATTTATATACTTCTGCATCTAAACAAGATAATGAGATACAATGTTCTCAGAAGATTGCTGGAAAAAGTCAGGTGAGAAGATCTGGAAATCAAAGGCTGGATGTTGTGCATGAACCACCTGAAGATTTAACTTCAGTGCAAAATCAATGCAAAGAGCTTGCTAGATCTGCTTCATCTACTTTAGGTCTGCAGATGGATGATAATAGGAAGGATGCTAATATTGGGAAAAGAAAAAGCAGTCTGTCCAGAAATTCTATGCTTTGCAGTAAAGAAAGGAAGAGTGCTAAAAAGCCAAAAATTTCTACTGAATTTATCTCTAGGACTAAAAATGATGAAGAAATTAAGTCGAATGAAAGTGTTAAGCAAGGTACTGATGTCAGGCCTTTGAATGATTCTTCAAAAGAGAAACAGTGCAATTTGACAGATCAACCTGTTTTAAAGAAATGTGTGAACCATGTCAAAGACTATCAATGTGCTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCCGATGGTGCACTATTTTGATGGCAAACCTGTAACTGCTGATTATGAACGAGGATCTAAAGTCATACATTGTCACAGGAATTGCACTGAATGGGCCCCAAATGTATATTTTGAAGATGATAATGCAATAAACCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATCAAATGTAGTTTCTGTGGACTTAAAGGAGCTGCACTTGGTTGCTTTGAGAAAAGTTGTCGAAGGAGCTTTCATGTTCCCTGCGCCAAGTGGACTCCTGAATGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTGTGCATTCCTCCTCCATGTTGCCGTATGAAAGTTCAGGATCCCAACACAGGAGCAAGATACTCACAGCTAGTAAGGTTAAAAGCTGTAGCCGCAAACATGACACTACAAGCCAAAGTCGTGTTACTCATGGATCTCACAAAAAAATTGTGCTGTGTTGTTCAGCTCTATCTGTACAAGAGAGGGATGTTGTTTCTGATTTTGAAAGAGTGTCCAAGGTTACAGTTTTGAAAACTTGGGATTCAAGTGTTACCCATGTAATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACTCTCAAAGTATTGTTGGGTATTCTAGAAGGAAAGTGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATGAAAGATACAGGACCTGTTGACGAAGAGCGTTATGAACTTAATGTTGACATCCATGGAATTAGGGATGGTCCCCGTCTTGGACGACAAAGAGCATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGTGATTTTATCCCATCATACAAGGGTTATCTGCAAGACCTTGTGATTGCAGCTGGAGGGACAGTTCTGCATAGAAAACCAGTGTCAGGTGACCATCAAGCAATTCCACCTGATATGCATCCACACCAAACCCTCATAATCTACAGTCTTGAGCTTCCTGCTAAATGCAATCCTTTGGAAAAGGATGCAATTTTTAGCCAAAGGCGATGTGATGCAGAGGTTTTGGCAAGGCCTGCTGGTTCAAAGGTTGCAAGTAACACATGGATTTTGAATTCAATTGCTGGCTGCAAGCTGCAAAGCCTTCCTCAATAA 2988 0.3969 MENLERMGRELKCPICLGLIHSAVSLTCNHLFCNSCIIKSMKSAFSCPVCKIPFARREIRPAPQIDSLVTIYKNMEAASAINLFGTQNPPATKSPDEDKQCKGDYKSGEKGTGGTHENHPEEEITPKRKKLAKKLQASTKSSASNRAEPSFPAKKRVQVPQDILSETPMRNLKSGGSVSLINKEGTQKASTKGNKMEIQSEKGDQVKEPFFWLREEKDGEMLSQQSSEDLIIEGSSPVLPSFSDLQDANDDSPSKQAPSDEVQNKPSFDLFDSEMFEWTQKPCSPELFSSPIKMQVEDTFENDENIEELVAGTQEHQLSADAYNINFENPVGNQLADVLPQGVSSQISSDDLNGKKKTTKRSRKAREKSKEDKIWEQKCQNDEMNLDSNIKSKDIEDQSLDNKHRASNLKKSNRKGKKVSFIISTDSTPQTACTVSNISGVQSKGRRMTAKNLYTSASKQDNEIQCSQKIAGKSQVRRSGNQRLDVVHEPPEDLTSVQNQCKELARSASSTLGLQMDDNRKDANIGKRKSSLSRNSMLCSKERKSAKKPKISTEFISRTKNDEEIKSNESVKQGTDVRPLNDSSKEKQCNLTDQPVLKKCVNHVKDYQCAFCLSSEESEASGPMVHYFDGKPVTADYERGSKVIHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPVHSSSMLPYESSGSQHRSKILTASKVKSCSRKHDTTSQSRVTHGSHKKIVLCCSALSVQERDVVSDFERVSKVTVLKTWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILSIEWIKACMKDTGPVDEERYELNVDIHGIRDGPRLGRQRALNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGTVLHRKPVSGDHQAIPPDMHPHQTLIIYSLELPAKCNPLEKDAIFSQRRCDAEVLARPAGSKVASNTWILNSIAGCKLQSLPQ* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2839 995 MobiDBLite consensus disorder prediction 95 130 - -
Tpr7g2839 995 SUPERFAMILY BRCT domain 883 993 IPR036420 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 216 268 - -
Tpr7g2839 995 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 385 416 - -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 508 533 - -
Tpr7g2839 995 SMART ring_2 13 50 IPR001841 -
Tpr7g2839 995 SMART ring_2 679 725 IPR001841 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 239 263 - -
Tpr7g2839 995 CDD BRCT_Bard1_rpt1 772 846 - -
Tpr7g2839 995 ProSiteProfiles BRCT domain profile. 879 995 IPR001357 -
Tpr7g2839 995 CDD ePHD 609 725 - -
Tpr7g2839 995 SMART PHD_3 678 726 IPR001965 -
Tpr7g2839 995 SUPERFAMILY BRCT domain 772 871 IPR036420 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 164 194 - -
Tpr7g2839 995 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 993 IPR031099 GO:0006281|GO:0006974
Tpr7g2839 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 728 IPR013083 -
Tpr7g2839 995 Pfam BRCA1 C Terminus (BRCT) domain 797 845 IPR001357 -
Tpr7g2839 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Tpr7g2839 995 ProSiteProfiles BRCT domain profile. 797 858 IPR001357 -
Tpr7g2839 995 SMART BRCT_7 765 848 IPR001357 -
Tpr7g2839 995 SMART BRCT_7 881 988 IPR001357 -
Tpr7g2839 995 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Tpr7g2839 995 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 557 571 - -
Tpr7g2839 995 Gene3D BRCT domain 880 987 IPR036420 -
Tpr7g2839 995 SUPERFAMILY RING/U-box 3 73 - -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 86 203 - -
Tpr7g2839 995 Pfam PHD-like zinc-binding domain 647 726 - -
Tpr7g2839 995 ProSiteProfiles Extended PHD (ePHD) domain profile. 606 726 IPR034732 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 387 407 - -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 557 585 - -
Tpr7g2839 995 Gene3D BRCT domain 768 875 IPR036420 -
Tpr7g2839 995 MobiDBLite consensus disorder prediction 346 373 - -
Tpr7g2839 995 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2839 Tpr-Chr7 35717044 35722922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2839 6 63 RAD5 or RAD16-like Gene Family AT5G22750 36.667 4.67e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2839 K10683 - gmx:100804958 1296.57