Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2835 ATGTTACAACAACCCTTCTCATCTTCATCTTCTTCCTTATCAGGTTTCAGATACAAACCCTTTTCTCCATTTTATCCACTTCAAATCAAATCAATATCTTTTAATTTCAATAGTAACCACTTAACTTCCCCTCTTATCATCCATCATCATCATCACTACCCATCACCATGTTCTCTTCATTTCACCACCAACACTTCTGATTCATCAACCTCTTTTGCAGTCTCTTACCTCATCAACACTCTTGACTTCACCCCAGCATTTGCTTCCAAACTCTGCTCCACTTACAATATTCGTTTCAAGACTGCTCAAAACCCTGATTTTGTCCTCAACTTTTTAAGAAACAATGGTTTCTCAGAAACCCAATTACGTTATATCATTCCCAAGGCACCATGGCTTCTTTCATGCGACCCCTTCACAAGGGTCATTCCAAAGTTTGAATTTTTTCTATCCAAAGGTGCATCTAAATCTGACATTGTTAAACTTGTCTGTAGTCACCCAACGGTCCTGGCTCCAAGTTTAGAGAATCATATAGTCCCAACATATGAATTGTTGTATAGATTATTGCAATCAGACAAGGAAACTATTGGTGTTATAATTCATAATCCATATTTACTTGCTAACTTTCGTGTGCCACATAACATCACATTGTTGGTTGAGAATGGAGTGAAGGACTCAGCCATTAGAAGAATGTTGCTTCGGACTTATTCTCGGGCATTGGATGCAAAGAAAACTTACATGCTGAAGTTGGTGAAGGAATTGAAGGATTTGGGTTTTAATCCTTCAGGAGCAACCTTTGGTGTAGCATTGGAAGCGAAACAAACGGTAAACAAAAGATTGTGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGGTGGTCTGATGAAGATGTTATAGAGGCATTTAGAAGGAAGCCTCATTGTATGTTAACATCCATTGATAAAATTAATTTAGTGATGAGTTTTTGGGTCGATCAGTTGGGTTGGGATGCGCGTGCCCTTGCAAAAGGACCGGCAGTTTTGTCAAATAGTTTGGAGAAAAGGATCATTCCAAGGGCCTCAGTAGTGCAATTTCTGCGGAAAAAAGGTTTGTGGAAAAAGACTGCAAGCTTAACTTCTCCAATTATTGTAACTGAGAAGTTGTTTCTTGATACGTATATAAATCGTTATAAGGAGGAGTCTTCTTATCTATTAAAAATGTATGAGGAAAAACTCAATCTTGCATACACTACGGACAAAAGTTGCATTCGATGA 1251 0.3813 MLQQPFSSSSSSLSGFRYKPFSPFYPLQIKSISFNFNSNHLTSPLIIHHHHHYPSPCSLHFTTNTSDSSTSFAVSYLINTLDFTPAFASKLCSTYNIRFKTAQNPDFVLNFLRNNGFSETQLRYIIPKAPWLLSCDPFTRVIPKFEFFLSKGASKSDIVKLVCSHPTVLAPSLENHIVPTYELLYRLLQSDKETIGVIIHNPYLLANFRVPHNITLLVENGVKDSAIRRMLLRTYSRALDAKKTYMLKLVKELKDLGFNPSGATFGVALEAKQTVNKRLWKEKVDAFKKWGWSDEDVIEAFRRKPHCMLTSIDKINLVMSFWVDQLGWDARALAKGPAVLSNSLEKRIIPRASVVQFLRKKGLWKKTASLTSPIIVTEKLFLDTYINRYKEESSYLLKMYEEKLNLAYTTDKSCIR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2835 416 PANTHER CGI-12 PROTEIN-RELATED 46 408 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 SMART mt_12 229 259 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 SMART mt_12 330 364 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 SMART mt_12 298 329 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 Pfam mTERF 109 259 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 Pfam mTERF 276 381 IPR003690 GO:0003690|GO:0006355
Tpr7g2835 416 Gene3D Transcription termination factor 3, mitochondrial 210 399 IPR038538 -
Tpr7g2835 416 Gene3D Transcription termination factor 3, mitochondrial 90 209 IPR038538 -
Tpr7g2835 416 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 46 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2835 Tpr-Chr7 35698818 35700068 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr7g2835 mTERF 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2835 K15032 - gmx:102663414 349.362