Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2830 ATGGGTGATAATAATTCAGCTAGCAATGGAAACATTGATGTTGTTTTGAATGTAAACGATGATGCCACTAAAAAGTGTGAAGACTCAAGCATTCAAGATTATGTTCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACATTCTTCTTGATATTTGCTGGTTGTGGTTCTGTGGTGACAAATCTTAACAATGATAAAGTAGTGACACTTCCTGGAATTGCAATTGTTTGGGGACTTGCTGTTATGGTATTAGCCTATTCTCTTGGTCATATATCTGGTGCTCATTTTAATCCTGCTGTTACTATTGCTCATGCTTCTGCCAAAAGATTTCCATTAAAGCAGATACCAGCTTATTTAATTGCTCAACTCCTTGGATCAACACTTGCAAGTGCAGCTCTCAAACTTATATTCAGTGGTAAAGAAAATCAGTTTGTAGGAACTGTTCCAGCTGGTTCTAATCTCCAAGCCTTTGTGGTTGAATTTATAATCACTTTCTTCCTTATGTTCGTAATTTCTGGAGTTGCCACTGATAACAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACAGTTATCTTAAATGTGTTATTTGCTGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGACCAGCTATTGTGCACCTTGAATTTAGAGGCATATGGATATATTTAGTGTCCCCTATTTTAGGAGCATTGGCTGGTACATGGGCATATACTTTCATTAGATACACAAACAAGCCAGTACGTGAAATCACCAAGAGTGCTTCATTCCTCAAACGTTCAGGAAGCAAGTGA 816 0.3922 MGDNNSASNGNIDVVLNVNDDATKKCEDSSIQDYVPLLQKLVAEVVGTFFLIFAGCGSVVTNLNNDKVVTLPGIAIVWGLAVMVLAYSLGHISGAHFNPAVTIAHASAKRFPLKQIPAYLIAQLLGSTLASAALKLIFSGKENQFVGTVPAGSNLQAFVVEFIITFFLMFVISGVATDNRAIGELAGLAVGSTVILNVLFAGPITGASMNPARSLGPAIVHLEFRGIWIYLVSPILGALAGTWAYTFIRYTNKPVREITKSASFLKRSGSK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2830 271 Gene3D Glycerol uptake facilitator protein. 3 261 IPR023271 -
Tpr7g2830 271 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 4 267 - -
Tpr7g2830 271 SUPERFAMILY Aquaporin-like 34 259 IPR023271 -
Tpr7g2830 271 PANTHER AQUAPORIN NIP2-1 4 267 IPR034294 -
Tpr7g2830 271 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 Pfam Major intrinsic protein 35 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Tpr7g2830 271 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr7g2830 271 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2830 Tpr-Chr7 35610817 35613723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2830 23 271 Major Intrinsic Protein MIP AT5G37820 59.036 3.66e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2830 K09874 - gmx:100812577 435.647