LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g2780	ATGTTTCATTTCTATCGCAGAGCAATACTCTGTCATAATCTCAGATTCAAAACCCTAAAGCCCTCTTCATTTCTTCTTCTTCAACCCTTTTGTTCATCTTCATCTTCTTCTTCTTCCCAAAATCACACTTTCACAATCAACTACCTCATTGATCTTGGATTATCCCCAAAATTAGCTGCAAAACTTTCCACCCGAGTTCATTTCAACGATTCCCAAAATCCCAATTCAGTCCTTAACCTATTCCAATCTTATGGCTTTTCAAATTCCCAATTTTCATCCATCATCAAAATCTGCCCAACTCTTCTCGTTTTTGATCCCAACAAAACCATTCTCCCCAAATTCAATTTCCTTCTCTCAAAGGGTGCTTCAAAATCCGATCTTGTTCACATCATTACTCAAAATCCAAGATATTTATATCAAAGCTTGGAAAATTCTATCACCCCATCTTATGATTTCATCAAAAGTTTCTTACAGTCTAATAAAGCTACCATTGCCTCTATCAGACAACGACCTTCTTCGATTAATAATCGAATCTCATCTCAGAATATTCAATTTTTGCTTCAAAATGGTGTCCCTCAATCAAAAGTTGCGATTTTGTTTAAAGATTGGTATTTCACACTTACTCAGAATCCTCCAATTTTTGAGAAGGTAGTGGTGGAACTAAAGCAAATAGGATTCGATCCTAAAACGACGTTTTTCATTACCGCTTTGCGTGCTAAGAGTTTGACATCTGCTTGGCAAACAAAGGTTGGTGTGTATAAGAAATGGGGTTGGTCTAAAGAAGATATTGTTGCAGCATTTTTGAAGCATCCATGGTGTATGTTGGCTTCTGTGGAGAAAATTAATGCAGTGATGGAGTTTTTTGTGAAAGAGATTGGTTGGGAGTCTACTGAGCTTGTCAAACATCCGATAATTATTATGCTGAGTTTGGAGAGAAGGATTGTTCCTAGGACTTATGTCTTGAAGTTTCTTGAATCTAAAGGTTTGATTGAGGATGTTAAATTGGCTGAACCTTTCAAAGTAACTGAGGAAGTGTTTTTGAAGAATTTTGTGAATTGTTTTAAGGAAGAAGCTTCTCAGCTGTTGAAGTTGTATGAAGAGAACAAAAAAGATGTTCCAGATAGGGTTTTCAAAAAAGGTTCGCCACCAGGACCGTGGAAGGGACGTAAAAAGGTTCGCGACCAGGACCACGACGAAGATGTGACTACAACTTAG	1215	0.3737	MFHFYRRAILCHNLRFKTLKPSSFLLLQPFCSSSSSSSSQNHTFTINYLIDLGLSPKLAAKLSTRVHFNDSQNPNSVLNLFQSYGFSNSQFSSIIKICPTLLVFDPNKTILPKFNFLLSKGASKSDLVHIITQNPRYLYQSLENSITPSYDFIKSFLQSNKATIASIRQRPSSINNRISSQNIQFLLQNGVPQSKVAILFKDWYFTLTQNPPIFEKVVVELKQIGFDPKTTFFITALRAKSLTSAWQTKVGVYKKWGWSKEDIVAAFLKHPWCMLASVEKINAVMEFFVKEIGWESTELVKHPIIIMLSLERRIVPRTYVLKFLESKGLIEDVKLAEPFKVTEEVFLKNFVNCFKEEASQLLKLYEENKKDVPDRVFKKGSPPGPWKGRKKVRDQDHDEDVTTT*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g2780	404	SMART	mt_12	264	295	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	SMART	mt_12	92	123	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	SMART	mt_12	128	159	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	SMART	mt_12	296	330	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	PANTHER	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	28	373	-	-
	Tpr7g2780	404	Pfam	mTERF	247	347	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	Pfam	mTERF	78	229	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	PANTHER	CGI-12 PROTEIN-RELATED	28	373	IPR003690	GO:0003690\|GO:0006355
	Tpr7g2780	404	MobiDBLite	consensus disorder prediction	374	404	-	-
	Tpr7g2780	404	MobiDBLite	consensus disorder prediction	387	404	-	-
	Tpr7g2780	404	Gene3D	Transcription termination factor 3, mitochondrial	167	364	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g2780	Tpr-Chr7	35043178	35044675	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Tpr7g2780		mTERF	1.1e-18	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g2780	K15032		-	gmx:102663105	350.132