Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2769 ATGAAGACAAAACAAAACTATTCTCAGCACCAAAACAAAATCTTCACAAACCAAAGAAAACTCCCCATCCCATCTCTCTGCCTTCCTTCCTTCCTTTCCCCCCTTCCTCCCCTCTCCCATCCAAAACTCATGGAAGGCTCTGACATTGAACGTCTTGATTTTGGAAAGATGGGACATGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGAGCTCCTTGTTGTAATGAGGTTTACTCATGCCGTCATTGTCATAACGAGGCAACGAGCATGTTGAAAAACCCTTTTGATCGTCATGAACTTGTTCGTCAAGATGTTGAACAAGTTGTTTGTGCGGTTTGTGATACAGAACAGCCAGTTGCTCAAGTTTGCACTAACTGTGGTGTTAGAATGGGGGAATATTTCTGTGAAATCTGCAAATTCTTCGATGATGATACGGGGAAACAGCAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTTGGTGGGAGTGAGAATTATTTCCATTGCCAGAAGTGCGGCTCTTGCTATGGAGTTGCTTTGCGCGATAATCATTTATGTGTGGAGAATTCCATGAGGCATCACTGTCCAATTTGTTATGAGTACCTTTTTGACTCGTTGAAAGACACCACTGTTATGAAATGTGGTCACACAATGCATTGTGAATGCTACCATGAGATGGTAAAGCGTGACAAGTACTGTTGTCCTATATGTTCCAAGTCGGTGATTGACATGTCTATGACATGGAAGAGAATCGATGAAGAGATTGAAGCAACTGTCATGCCTGAGGATTATCGGAATAGAAAGGTCTGGATACTTTGTAATGACTGCAACGATACAACCGAAGTTCACTTCCACATTATTGGGCATAAATGCGGTCACTGCAATTCATATAACACTCGTGCTATTGCTCCTCCCGTTCTTCCGCAATAA 933 0.4266 MKTKQNYSQHQNKIFTNQRKLPIPSLCLPSFLSPLPPLSHPKLMEGSDIERLDFGKMGHGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLKNPFDRHELVRQDVEQVVCAVCDTEQPVAQVCTNCGVRMGEYFCEICKFFDDDTGKQQFHCDDCGICRVGGSENYFHCQKCGSCYGVALRDNHLCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMVKRDKYCCPICSKSVIDMSMTWKRIDEEIEATVMPEDYRNRKVWILCNDCNDTTEVHFHIIGHKCGHCNSYNTRAIAPPVLPQ* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2769 310 Pfam Zinc-ribbon 243 301 IPR039512 -
Tpr7g2769 310 Gene3D - 271 305 - -
Tpr7g2769 310 ProSiteProfiles Zinc finger CTCHY-type profile. 131 195 IPR017921 -
Tpr7g2769 310 Pfam Zinc finger, C3HC4 type (RING finger) 196 238 IPR018957 GO:0046872
Tpr7g2769 310 SUPERFAMILY Zinc hairpin stack 132 189 IPR037275 -
Tpr7g2769 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 270 IPR013083 -
Tpr7g2769 310 SUPERFAMILY CHY zinc finger-like 59 130 IPR037274 GO:0008270
Tpr7g2769 310 Pfam CHY zinc finger 61 141 IPR008913 GO:0008270
Tpr7g2769 310 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 44 310 - -
Tpr7g2769 310 SMART ring_2 196 238 IPR001841 -
Tpr7g2769 310 ProSiteProfiles Zinc finger RING-type profile. 196 239 IPR001841 -
Tpr7g2769 310 SUPERFAMILY RING/U-box 195 247 - -
Tpr7g2769 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 44 310 - -
Tpr7g2769 310 ProSiteProfiles Zinc finger CHY-type profile. 54 129 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2769 Tpr-Chr7 34905700 34909768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2769 53 309 C2H2 Transcription Factor Family AT3G18290 39.695 2.48e-57 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2769 K10144 - gmx:100812246 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2769 7 34905700 34909768 Tpr7g2769 7 34905700 34909768 ECH