Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2759 ATGGCTATAATCAGGAATATATTTGAAGATATGAGATCGAGATCTCAAAGGGCAGTTGCGGTTGAGAAAGAAGAGAAAGTGGCTGTTGGTGATGGTTTAAGACAGAGTTGTTGGGCTAACATGCCACAAGAACTTCTTCGTGAGGTTCTTGTCAGAATTGAAGCATCAGAGGACACGTGGCCACCTAGGAAAAACGTTGTTGCATGTGCTGGAGTATGTCGGAACTGGAGAGTTATCACCAAAGAAATCGTTAAAAAACCTGAAATTTCTGCTAAGATTACTTTCCCCATTTCTGTTAAACAGCCTGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACGTACTATTTGTATCTCAGTTTAACTGGTTCGCTAGGTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCTACCTGCACTGATTATATCATCTCTCTAGATGGATATGATATGTCAAGAGGAAGCAATTCCTATGTCGGGAAACTGAGATCAAATTTCCTTGGAACGAAGTTCACAGTCTATGATGGTCAGCCACCTCATGCCGGGGCAAAGATTGCAAAAAGTCACTCCACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACAGGAAACTATCCAGTTGCTCACATCTCATATGAATTGAATGTTCTAGGCTCTAGGGGCCCTAGGAGAATGCACTGTGTAATGGATTCCATTCCTTCCTCTTCAATCGAACCAGGAGGGGTAGCTCCTACACAAACTGAGTTTTCTCTAAACAACATAGAAATGTTTCCCCTGTTTCCTTTTTTCCGATCAAAATCAAGTCGTGTGGTGGAGAACTCTCTATCCGGACCCCTGGTTGGTGATAAAAAAGAGGGCATGCTTGTGTTGAAAAACAAGTCTCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGTGTGACGGTTGCCTCGGTTAAAAACTTTCAGCTGGTTGCTTCTGCAGAAAATGGAGCTGCTGGACCGGAACATGAAAAGATCATCCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTATCGATACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAA 1179 0.4377 MAIIRNIFEDMRSRSQRAVAVEKEEKVAVGDGLRQSCWANMPQELLREVLVRIEASEDTWPPRKNVVACAGVCRNWRVITKEIVKKPEISAKITFPISVKQPGPRENLLQCFIKRNRSTQTYYLYLSLTGSLGDDGKFLLAARKCRRPTCTDYIISLDGYDMSRGSNSYVGKLRSNFLGTKFTVYDGQPPHAGAKIAKSHSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSSRVVENSLSGPLVGDKKEGMLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGAAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2759 392 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
Tpr7g2759 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Tpr7g2759 392 Gene3D Tubby Protein; Chain A 95 392 IPR025659 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Tpr7g2759 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Tpr7g2759 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 392 - -
Tpr7g2759 392 PANTHER TUBBY-RELATED 4 392 - -
Tpr7g2759 392 Pfam F-box domain 38 87 IPR001810 GO:0005515
Tpr7g2759 392 SUPERFAMILY Tubby C-terminal domain-like 87 392 IPR025659 -
Tpr7g2759 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Tpr7g2759 392 Pfam Tub family 99 387 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2759 Tpr-Chr7 34809219 34813968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2759 12 392 TUB Transcription Factor Family AT2G47900 72.585 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr7g2759 Tub 2.1e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2759 K19600 - gmx:100778346 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2759 7 34809219 34813968 Tpr7g2759 7 34809219 34813968 ECH