Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2752 ATGCAAGAACATCATCAACAACTATCCACTCATGAAGCTTCCAATATTTCCATTCAGACTGAGACCGGGCTAAACAAAGAAATTTCAGATAATGGATCCAGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTGGGGTTTGGCAGCACAGCTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGACATTTTGCGGGTTTTGAGCTTCAAAAGAAAATCGAATGTAGTCGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACTTTAAGACAGCTGCAGACAGTACTAATATGGCCTCCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCTGTTTCACATGCACCAAATCTGTCCCCTTCAGTTGTTACGCCTGTTTCTGCAAGGACATATAATGAACAACAGATTAAGCCACATAAAGATGCTAAATCTAAGGTTTCAAGGTGCCTAACAATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGCACTGACCAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGTGATGAAAGAAATACCTTTAAAATGGAATGCAATTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACCAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACGGACAGAATCAGCGCAACTTAAGTTCAGAAGCAATAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACGATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTTCTTTTACCTTGGGCCTCTTGGCATCTGTTTTTGCAATCGTCCTTGCAATCAGAGAGTATATATGGACATATGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTGCATCTCTTTTATACTTTGTTGCATTTGGCGCCCATTTATTCGATACTACTTTCATCGATTTGTGGTTTTGGAATTGCTATGGGAATCAACTATATGTATATCCAGTATGTGACATGGAGACTTCAGGTCTCTATTAATGATAGCCCAGTATGA 1266 0.4036 MQEHHQQLSTHEASNISIQTETGLNKEISDNGSSGKRPDISLQVPPRPLGFGSTAGGRVLDHSQSFSKGISSPKDILRVLSFKRKSNVVDGERSSLLNSDFKTAADSTNMASISEISWSRCNSLPVSHAPNLSPSVVTPVSARTYNEQQIKPHKDAKSKVSRCLTIPARNVVIVRSVSFNTRTDQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECNCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNGQNQRNLSSEAISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFSFTLGLLASVFAIVLAIREYIWTYAALEFALVAVTVHLFYTLLHLAPIYSILLSSICGFGIAMGINYMYIQYVTWRLQVSINDSPV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2752 421 CDD RING_CH-C4HC3_MARCH 215 262 - -
Tpr7g2752 421 PANTHER ZINC FINGER PROTEIN 4 421 - -
Tpr7g2752 421 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Tpr7g2752 421 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Tpr7g2752 421 SMART ringv_2 214 262 IPR011016 GO:0008270
Tpr7g2752 421 PANTHER OS02G0165000 PROTEIN 4 421 - -
Tpr7g2752 421 SUPERFAMILY RING/U-box 211 265 - -
Tpr7g2752 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2752 Tpr-Chr7 34740544 34744926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2752 201 320 C3H Transcription Factor Family AT2G37950 29.231 1.55e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2752 - - gmx:100527094 623.624