Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2713 ATGGCCACTTTCACAAGAACAAAGCCTCATCTTAATGTTGGCACCATTGGGCATGTAGATCATGGAAAAACCACATTAACTGCTGCCATTACAAAGGTACTAGCTGATGAAGGTAGAGCGAAGGCCATTGCTTTTGACGAAATCGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTATTGCTACAGCTCATGTTGAGTATGAGACCTCAAAGAGGCATTATGCCCATGTTGATTGCCCGGGACATGCAGACTATGTTAAGAACATGATTACTGGAGCTGCACAAATGGATGGTGGAATCCTCGTGGTTTCTGCTCCAGATGGTCCAATGCCTCAAACAAAGGAACATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCACTGGTATGCTTTCTAAATAAAGTTGATGCTGTTGACGATCCAGAGTTACTTGAACTTGTCGAAATGGAGCTTCGTGAACTACTTAATTTCTATAAATTTCCCGGGGATGATATCCCAATTGTGAGAGGTTCAGCTCTGTCTGCCTTGCAAGGGACTAATGAAGAACTTGGAAAGAAAGCTATCTTGAAACTAATGGATGCTGTCGATGAATATATTTCTGATCCAGTCCGGCAGCTAGACAAACCTTTTTTAATGCCAATCGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACTGGCCGTATTGAACAAGGTACTATCAAAGTTGGTGAAGAGGTTGAAATATTAGGACTAACAAAGAGTGAACCTTTGAAGACCACCGTAACTGGTGTCGAAATGTTCAAGAAAATATTGGATCGAGGGCAAGCTGGTGATAATGTAGGACTTCTTGTACGAGGACTAAAACGAGATGATGTGCAGAGAGGAATGGTTATTACGAAGCCTGGTGCATTGAAAACATATAAGAAGTTTGAAGCGGAGATTTATGTCCTGTCAAAAGATGAAGGTGGCCGTCATACCGCTTTTTTCTCTAACTATATGCCTCAGTTTTACCTGAGGACTGCAGACATTACTGGAAAGGTGCAGTTACCTGAAAATGTCAAGATGGTTATGCCTGGTGATAATGTCACCGCAACTTTTGAGCTGATATTACCTGTTCCTCTTGAATGCGGACAAAGATTTGCTTTGAGAGAGGGAGGTAGGACAGTTGGTGCAGGAGTCGTCTCCAAAGTGATTGCCTAG 1191 0.4307 MATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGRAKAIAFDEIDKAPEEKKRGITIATAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRIEQGTIKVGEEVEILGLTKSEPLKTTVTGVEMFKKILDRGQAGDNVGLLVRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLECGQRFALREGGRTVGAGVVSKVIA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2713 396 Pfam Elongation factor Tu domain 2 225 296 IPR004161 GO:0005525
Tpr7g2713 396 Gene3D Translation factors 340 395 - -
Tpr7g2713 396 PANTHER ELONGATION FACTOR TU-RELATED 1 395 - -
Tpr7g2713 396 CDD EFTU_III 302 391 - -
Tpr7g2713 396 Gene3D Translation factors 206 336 - -
Tpr7g2713 396 PANTHER ELONGATION FACTOR TU 1 395 - -
Tpr7g2713 396 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 8 204 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 CDD EFTU_II 211 299 IPR033720 -
Tpr7g2713 396 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 305 396 IPR009001 -
Tpr7g2713 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 226 IPR027417 -
Tpr7g2713 396 Pfam Elongation factor Tu C-terminal domain 301 394 IPR004160 -
Tpr7g2713 396 PRINTS GTP-binding elongation factor signature 12 25 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 PRINTS GTP-binding elongation factor signature 56 64 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 PRINTS GTP-binding elongation factor signature 76 86 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 PRINTS GTP-binding elongation factor signature 92 103 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 TIGRFAM EF-Tu: translation elongation factor Tu 2 395 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tpr7g2713 396 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 IPR031157 -
Tpr7g2713 396 CDD EF_Tu 9 203 IPR041709 -
Tpr7g2713 396 Gene3D - 1 203 IPR027417 -
Tpr7g2713 396 Hamap Elongation factor Tu [tuf]. 1 396 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tpr7g2713 396 SUPERFAMILY Translation proteins 205 301 IPR009000 -
Tpr7g2713 396 Pfam Elongation factor Tu GTP binding domain 8 201 IPR000795 GO:0003924|GO:0005525
Tpr7g2713 396 TIGRFAM small_GTP: small GTP-binding protein domain 12 149 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2713 Tpr-Chr7 34388888 34391985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2713 6 394 Eukaryotic Initiation Factors Gene Family AT5G60390 29.977 1.29e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2713 K02358 - gmx:102667962 728.398