Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2684 ATGGGTATTTCCTGGAGTAGCAGCAGAAGAAACAATTACATCCAAAACCCACCACCACAACCACCACCACAACTACCACCACCACCACCACCACCTTACTATTACTCTCCAGATTCACATCCACCACCACATCCTCCTCAACAAGGTTACAACAACTACCCTCCTCAACCACCTCCACCTCATCAACCTCAAACTCATTCATTTTACTTCTCTAACCCTAATGCTTACACAAACTATCCCAATTCTTCGGTAAATCGAATTCAATTTCATCCTTCTTATTATGTTAATCAACAACAACATGCTTGGGGTCCACCGAATCCTTCTTTTCATGCTCCTTCGTCAACACCACCACCACCACCTCCTTATGTTGATCATCAAACTGCTAAGAAGATTAGGAATCATGTTAATGTTCATAAAGATACTTTGCGTCTTGAGGTTGATCAGCATAACCCTGATCACCATCTTGTTTCTTTCGTTTTCGATGCTGTCTTTGGTGGAAGCATTACTATCTTCTACTTTGCGAAGGAAGAAGATAAATGTAGATTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACTTAGGCTTCTATGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGACGTCTTTCCTCTTGTAATATGCGCTGAAACGTGTTTGGAAGCTCCCTCAGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCTAGATGCATCCCCTGATTCCCCTCACATGCAAATAACTCAAGCTGTCTTGGTGAAAAGTAATGGTGATAGTGCTTTCCAGATAAAAGTAGTTAAGCAGATTCTTTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAGCTCAGAAGCTGCAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGCGAGTGTGCGAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAAGAACTTATGGAGATCAAGGTAAAGAGTGGGAATCCATGA 1146 0.4293 MGISWSSSRRNNYIQNPPPQPPPQLPPPPPPPYYYSPDSHPPPHPPQQGYNNYPPQPPPPHQPQTHSFYFSNPNAYTNYPNSSVNRIQFHPSYYVNQQQHAWGPPNPSFHAPSSTPPPPPPYVDHQTAKKIRNHVNVHKDTLRLEVDQHNPDHHLVSFVFDAVFGGSITIFYFAKEEDKCRFVPLFPDAFVPVKVPFEKGVGQKFAQPSGTGIDLGFYELDDLSKPSPGEDVFPLVICAETCLEAPSANETPKTPDDSMLDASPDSPHMQITQAVLVKSNGDSAFQIKVVKQILWIDGVRYELRELYGIGSSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIKVKSGNP* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2684 381 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 325 365 IPR045195 -
Tpr7g2684 381 MobiDBLite consensus disorder prediction 1 63 - -
Tpr7g2684 381 Pfam Zinc finger, C3HC4 type (RING finger) 324 370 - -
Tpr7g2684 381 ProSiteProfiles Zinc finger RING-type profile. 326 365 IPR001841 -
Tpr7g2684 381 SUPERFAMILY RING/U-box 325 371 - -
Tpr7g2684 381 MobiDBLite consensus disorder prediction 15 63 - -
Tpr7g2684 381 SMART ring_2 326 364 IPR001841 -
Tpr7g2684 381 PANTHER MAHOGUNIN 1 379 IPR045194 GO:0061630
Tpr7g2684 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 379 - -
Tpr7g2684 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 375 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2684 Tpr-Chr7 34057711 34063889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2684 91 380 C3H Transcription Factor Family AT3G06140 59.044 1.34e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2684 - - vra:106775674 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2684 7 34057711 34063889 Tpr7g2684 7 34057711 34063889 ECH