Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2671 ATGAGTGACTCAAAGAATGAAGCCACTGCAAACAATGGCCAATATGGCTCTTCAGATCAGATGAAACGTGAGACTGAGCTGGAATTATCCCCAGAAGAGGAAGATATCGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACTGCAGAAGATATTGAAAAGTATTGGACTTCAAAATTCTCTTCATCATCAACTGCATGTTAA 237 0.3966 MSDSKNEATANNGQYGSSDQMKRETELELSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEDIEKYWTSKFSSSSTAC* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2671 78 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 75 IPR017930 -
Tpr7g2671 78 MobiDBLite consensus disorder prediction 1 20 - -
Tpr7g2671 78 SMART sant 25 73 IPR001005 -
Tpr7g2671 78 Pfam Myb-like DNA-binding domain 30 68 IPR001005 -
Tpr7g2671 78 MobiDBLite consensus disorder prediction 1 32 - -
Tpr7g2671 78 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 75 - -
Tpr7g2671 78 PANTHER MYB TRANSCRIPTION FACTOR 1 75 - -
Tpr7g2671 78 SUPERFAMILY Homeodomain-like 30 71 IPR009057 -
Tpr7g2671 78 Gene3D - 29 77 - -
Tpr7g2671 78 ProSiteProfiles Myb-like domain profile. 30 71 IPR001005 -
Tpr7g2671 78 CDD SANT 30 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2671 Tpr-Chr7 33933704 33934882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2671 29 77 MYB Transcription Factor Family AT5G52600 40.816 8.64e-13 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr7g2671 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2671 - - mtr:MTR_2g023100 131.724