Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2622 ATGGAGGGTAGTAGTTCTAATGGAAATTCTTCTTATCATGTGATGAGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTTCTTCAATGATGATGATGCCTTTAGTCACTTCTCATCAACAACATCATCAACATAATCATCTATTAAATTCCAACAATAATCCTAATAACAACAATACTAATGCAAACAACAATAGTTGTCACTTTCTTCCTATCCCTAATTCCACTAATAATAACAACAATAATAATCACTACAACATGCTTCAAAACAATCCCAACAACAACAATACTACTACTACTACTCCTGGTTTAGGTTACTATTTCATGGACAACAATGGAAGTTCTTCTTCTTCATCTTCTGCTGTTAAAGCTAAAATCATGGCTCATCCTCACTATCATCGTCTCTTAGAAGCTTACATCAATTGTCAAAAGGTTGGAGCACCAGGTGAAGTTGTAGCTAGGTTAGAAGAAGCATGTGCATCTGCAGTGAGAATGGGTGGAGAAGGAGTTGGATCAGGTTGCATAGGGGAAGATCCAGCTTTGGATCAGTTTATGGAAGCTTATTGTGAGATGTTGATTAAGTATGAACAAGAACTCTCTAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGAATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGCTTGTAATGAAAGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATCTATACAACATGGTAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGACAGCTTTTGAGAAAGTACAGTGGATATTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAAAAAGGAAAACTACCAAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGTAGACATTACAAATGGCCTTATCCCTCTGAGTCACAGAAGCTGGCACTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAAAGGCATTGGAAACCATCAGAGGACATGCAGTTTGTGGTAATGGATCCAAGCCATCCACATTATTACATGGAAAATAATGTTCTCACCAATTCATATCCTATGGATCTATCCAACACCATGCTCTAG 1137 0.3738 MEGSSSNGNSSYHVMSAFGENSGGLCSSMMMMPLVTSHQQHHQHNHLLNSNNNPNNNNTNANNNSCHFLPIPNSTNNNNNNNHYNMLQNNPNNNNTTTTTPGLGYYFMDNNGSSSSSSSAVKAKIMAHPHYHRLLEAYINCQKVGAPGEVVARLEEACASAVRMGGEGVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACNESGDRNGSSEEDHVDLYNMVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMENNVLTNSYPMDLSNTML* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2622 378 Pfam ELK domain 259 280 IPR005539 GO:0003677
Tpr7g2622 378 SMART HOX_1 281 346 IPR001356 GO:0003677
Tpr7g2622 378 Pfam KNOX2 domain 173 220 IPR005541 GO:0003677|GO:0005634
Tpr7g2622 378 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Tpr7g2622 378 CDD homeodomain 291 343 IPR001356 GO:0003677
Tpr7g2622 378 PANTHER - 1 366 - -
Tpr7g2622 378 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Tpr7g2622 378 ProSitePatterns 'Homeobox' domain signature. 317 340 IPR017970 GO:0000981|GO:0006355
Tpr7g2622 378 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Tpr7g2622 378 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Tpr7g2622 378 SUPERFAMILY Homeodomain-like 281 357 IPR009057 -
Tpr7g2622 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 366 - -
Tpr7g2622 378 Gene3D - 284 346 - -
Tpr7g2622 378 SMART ELK_2 259 280 IPR005539 GO:0003677
Tpr7g2622 378 Pfam KNOX1 domain 120 159 IPR005540 GO:0003677|GO:0005634
Tpr7g2622 378 ProSiteProfiles ELK domain profile. 259 279 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2622 Tpr-Chr7 33463743 33472226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2622 121 378 Homeobox Transcription Factor Family AT1G62360 78.707 4.60e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr7g2622 KNOX2 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2622 - - gmx:100805837 507.294