Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2620 ATGAAGCATCTCCTTAGATCAGCTCGAACATGGCGGTTACGTTTCCGTTCACTTCCATCTTCCCAAACCCTAACTTCTCACTCCTCACGCCGCATTCACTCTTCTCTCTCTCCAAAAGTAGAATCTGCGTCTGCTAAATCAAGCTACGTCTCCGATGTTTCGAGTTCGAGAGTTTTTCGAGGGGATTTGGGGATGTTTCCTGCCGTTTTGGCTGGTTTGTTTGGAATTGGATTGGTGGAAACGGCTTATTCGGAAGAAGCTAATGAGGATAATGAGGATGTGCAAGAAATTGCTAAGAAAGAGCGTCAGAGAATTCAGGATTTGCTTACAACTAAGGGAATTCGACAAGGTTCTTATCCTCGATTCAATGTCGCTGTTAAAGGCCAGAAGGTCAGTATAAAGTTTCAAATTCCTCCTGGCTGTGAAGTTTCACAACTTATTGCAAATCTTACTGCACATCTTGGACTGAAATCTGAAGGCCATGGCGGTGGTTCAGATATGAAGTTGCGTGCATGGGACAGCACGGTTGCTTGGCAACTTATCCTTACTCATCCATCAAAGCAAAACCATATTCAACAGAATGAACCGTCTTCAACAGATACAAATGCACATGACAGAGATCTATGCATACTTATATTTCATTCTCTCATTGGCTCAGATAAAGTTGAAATTGAATTTATGAAGCAAGGGAACATGAGTGCCGAAGAGCTTGATGCTTTCGTATCTATTTTACAATTAGCTGGAAACAAGTTGGTAGAAAGAAATCCCCTGGAGAAAAAGACAAGGGAAGAGACCGAACAGACGCCATCTATAGATAAATCTATTTCTAGTCTTGAGGCCATGGGAGTAAGAACATATGGACTCAATGAACCCATAGGTATATCAAATGGTGACATATCATGGGACATTATCGCTGGGTACGAGCATCAAAAACGGGTAATAGAAGATACAGTACTATTGGCTTTGCGTAGTCCAGAAGTATATGATGATATTGCTCGAGGGACTCGGCATAAGTTTGAGTCTAACAGACCTCGAGCCGTGCTGTTTGAAGGTCCACCAGGTACAGGAAAAACCTCTTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTCTATGTGCCCCTTGAGGTCGTAATGTCTGAATTCTACGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCACTAGCAAACGATCTTCCCAATGGTGCTATTATATTTTTGGATGAGATTGATTCTTTTGCTGCTGCTCGTGATAATGACATGCATGAAGCTACACGTAGAATGCTATCAGTATTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCGGCATTAATTAGTCGGTTTGATACTATGATCGCTTTTGGTTTACCTGATCATCATAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCTAAAGCTGAACTTGATGAACTAGCAACAGTTACAGAAGATATGGCTGGAAGAGATATCAGAGATGTTTGTCTGCAAGCGGAACGATCCTGGGCATCAAAGATAATTCGGGGACAAGTATCTAAAGAGGAGGAACAGGCGAACCTTCCACCTTTGCAAGAATATATAGCATGTGCTACACATCGACGGGAAGCACTGCTTAGTGCTGCTGCAAATAGGAAGCTCCGAAATTCTTCCCGCCGCAGAATAATAAGTGAATAA 1740 0.4247 MKHLLRSARTWRLRFRSLPSSQTLTSHSSRRIHSSLSPKVESASAKSSYVSDVSSSRVFRGDLGMFPAVLAGLFGIGLVETAYSEEANEDNEDVQEIAKKERQRIQDLLTTKGIRQGSYPRFNVAVKGQKVSIKFQIPPGCEVSQLIANLTAHLGLKSEGHGGGSDMKLRAWDSTVAWQLILTHPSKQNHIQQNEPSSTDTNAHDRDLCILIFHSLIGSDKVEIEFMKQGNMSAEELDAFVSILQLAGNKLVERNPLEKKTREETEQTPSIDKSISSLEAMGVRTYGLNEPIGISNGDISWDIIAGYEHQKRVIEDTVLLALRSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSEFYGKSERLLGKVFSLANDLPNGAIIFLDEIDSFAAARDNDMHEATRRMLSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIAFGLPDHHNRQEIASKYAKHLSKAELDELATVTEDMAGRDIRDVCLQAERSWASKIIRGQVSKEEEQANLPPLQEYIACATHRREALLSAAANRKLRNSSRRRIISE* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2620 579 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 77 562 - -
Tpr7g2620 579 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 77 562 - -
Tpr7g2620 579 Coils Coil 84 111 - -
Tpr7g2620 579 ProSitePatterns AAA-protein family signature. 448 467 IPR003960 GO:0005524|GO:0016887
Tpr7g2620 579 SMART AAA_5 343 478 IPR003593 -
Tpr7g2620 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 521 IPR027417 -
Tpr7g2620 579 Pfam ATPase family associated with various cellular activities (AAA) 347 475 IPR003959 GO:0005524|GO:0016887
Tpr7g2620 579 CDD AAA 340 476 - -
Tpr7g2620 579 Gene3D - 477 542 - -
Tpr7g2620 579 Gene3D - 298 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2620 Tpr-Chr7 33423548 33431210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2620 343 543 Calmodulin-binding Proteins AT3G56690 36.842 9.68e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2620 - - mtr:MTR_2g024440 951.044