Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2618 ATGGTATCTCAGGGTACCAATTTCGTCCTACGGCATTTTATTTTGGCCATTGTGATTGTAATCTTTTTCACTCCAAAACTTAGTTATGCCAAACAATCCAAGCTAATGGGCATGAAAATGAATATGATTGATAATTGTTGGAGACCAAATCCTGAATGGAGGAGATATAGACAACAACTAGCGACTTGCTCTGTAGGCTATGTTGGAAAGATGATAAACAACATTGGTAACGACCTCATATATTATAAAGTTACTGACCCAAATGACGATCCCATAACCCCGAAACCTGGTACGTTGAGATACGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTTCAAAAAGACATGAACATTAAACTCATGAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGCATCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAATTCATCACTGCAAAGCTCAAGCACCAGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATCTAGGTTCAGTAGACGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATTGATCATAATACACTTTATAAATGTGAAGATGGTCTTCTTGATGTTACAAGAGGTTCTACTGATATCACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGCCATGATGATGGGTATGTGAGAGACAACAACATGAAAGTCACTGTTGTGTACAATCATTTCGGACCTAACTGCAACCAACGGATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAATATGCCATTGGTGGGAGTATGGGGCCTAGTCTCAAAAGTGAGGGTAACCTCTTCATAGCACCAAAAGTCGGTAGTAAAGAGGTAACATGGAGAAAAATCGGTAATACAAGTGGAGACAAATGGGAATTTCATTCCGTAAGGGACGCATTTGAAAATGGAGCCTCCTTTGTTGTAACAAAAGGAGGACGTGTGCCAAAGCCGAATTATAGTAAAGAACAAGGTTTTAAAGTTGCTGATGTTAAATATGTTAAGTCATTGACAAGATCATCAGGCGCATTCCAATGCAGTAGGACATTTATATGTTGA 1176 0.3929 MVSQGTNFVLRHFILAIVIVIFFTPKLSYAKQSKLMGMKMNMIDNCWRPNPEWRRYRQQLATCSVGYVGKMINNIGNDLIYYKVTDPNDDPITPKPGTLRYGASVIQGKVWITFQKDMNIKLMKPLLISSFTTIDGRGINVHIANNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNGKVIHLGSVDGDAIRLVTASKIWIDHNTLYKCEDGLLDVTRGSTDITISNNWFREQDKVMLLGHDDGYVRDNNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEGNLFIAPKVGSKEVTWRKIGNTSGDKWEFHSVRDAFENGASFVVTKGGRVPKPNYSKEQGFKVADVKYVKSLTRSSGAFQCSRTFIC* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2618 391 PANTHER PECTATE LYASE 2 388 - -
Tpr7g2618 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
Tpr7g2618 391 Pfam Pectate lyase 127 308 IPR002022 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Tpr7g2618 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Tpr7g2618 391 Gene3D - 40 384 IPR012334 -
Tpr7g2618 391 SMART amb_all 117 314 IPR002022 -
Tpr7g2618 391 SUPERFAMILY Pectin lyase-like 26 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2618 Tpr-Chr7 33409818 33411544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2618 71 318 Polysaccharide Lyase AT5G09280 71.774 9.89e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2618 K01728 - gmx:100780437 672.159