Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2600 ATGGCAAAATTTATACGAAAAATTGGTTCACGTAAAAACGGACGTATTGGTTCGCGCAAGCATCCTCGTAAAATACATAGGGGGGTTATTTATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATCTACGAGGTCGGGCGATTTCTTGGTCCTCTGCCGGTTCATGTGGATTCAAAGGTTCACGAAGGAGTACACCGTTTGCCGCTCAAACCGTAGCAGGAAATGCTATTCGACCAGTAGTCGCTCAAGGCATGAAACGAGCAGAAGTCATGATAAAAGGTCCCGGTCCAGGAAGAGATGCGGCATTAAGAGCTATTTTAAGAAGTGGTATACGATTAAAGTTTCTACGGGATGTAACACCTCTGCCACATAATGGATGTAGGGCTCCTAAAAAAAGACGTATATAA 417 0.4317 MAKFIRKIGSRKNGRIGSRKHPRKIHRGVIYVQASFNNTIVTVTDLRGRAISWSSAGSCGFKGSRRSTPFAAQTVAGNAIRPVVAQGMKRAEVMIKGPGPGRDAALRAILRSGIRLKFLRDVTPLPHNGCRAPKKRRI* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2600 138 TIGRFAM uS11_bact: ribosomal protein uS11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Tpr7g2600 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 6 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tpr7g2600 138 Hamap 30S ribosomal protein S11 [rpsK]. 6 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tpr7g2600 138 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 137 - -
Tpr7g2600 138 SUPERFAMILY Translational machinery components 24 138 - -
Tpr7g2600 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Tpr7g2600 138 Gene3D Ribosomal protein S11 12 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Tpr7g2600 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Tpr7g2600 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2600 Tpr-Chr7 33210987 33211603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2600 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 37.273 9.33e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2600 K02948 - pop:4929706 224.172