Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2597 ATGACGATACATTTATACAAAACTTCTATCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCTAATTCACGAAATCGTTTGATTTCTGGACAGCATCATTGTGATAAAGGCCGTAATGCTAGAGGAATCATTACCGCAGGGCATAGAGGGGGGGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCATAACTATAGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCGTTGTTTATGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAGGAGGGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTAGGGAATGTTGGGGCAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCTAGGTAAGCGTCCTGTAGTAAGGGGGGTAGCTATGAACCCTGTAGACCATCCACACGGGGGTGGTGAAGGGAAGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGTTATCCCGCACTTGGAAGAAGAACTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 825 0.4339 MTIHLYKTSIPSTRNGAVDSQVKSNSRNRLISGQHHCDKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTVVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRRGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGAKRWLGKRPVVRGVAMNPVDHPHGGGEGKAPIGRKKPSTPWGYPALGRRTRKRNKYSDNLILRRRSK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2597 274 ProSitePatterns Ribosomal protein L2 signature. 216 227 IPR022671 GO:0003735|GO:0005840|GO:0006412
Tpr7g2597 274 Gene3D - 1 112 IPR012340 -
Tpr7g2597 274 Gene3D Ribosomal protein L2, domain 3 195 273 IPR014726 -
Tpr7g2597 274 Hamap 50S ribosomal protein L2 [rplB]. 1 273 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Tpr7g2597 274 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tpr7g2597 274 Pfam Ribosomal Proteins L2, C-terminal domain 123 249 IPR022669 GO:0003735|GO:0005840|GO:0006412
Tpr7g2597 274 Gene3D - 116 194 IPR014722 -
Tpr7g2597 274 TIGRFAM rplB_bact: ribosomal protein uL2 5 273 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Tpr7g2597 274 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 3 272 - -
Tpr7g2597 274 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 14 274 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tpr7g2597 274 PANTHER RIBOSOMAL PROTEIN L2 3 272 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tpr7g2597 274 MobiDBLite consensus disorder prediction 227 265 - -
Tpr7g2597 274 Pfam Ribosomal Proteins L2, RNA binding domain 40 115 IPR022666 GO:0003735|GO:0005840|GO:0006412
Tpr7g2597 274 SUPERFAMILY Translation proteins SH3-like domain 124 271 IPR008991 -
Tpr7g2597 274 SUPERFAMILY Nucleic acid-binding proteins 3 123 IPR012340 -
Tpr7g2597 274 SMART Ribosomal_L2_C_2 122 251 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2597 Tpr-Chr7 33187182 33188958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2597 51 233 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.436 1.24e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2597 K02886 - sspl:59436086 506.908