Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2582 ATGCCAGACGATATTCCCGGTGTTACTTCACCTATGATATACATTGGCATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCATCACACTGGCTCATCTAAGACTTGGTATTCTGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGCTGCTTTGAAACTTTTGGGCGAGAAAACAACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTGGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTTACTCTGTATATGATGGAGTGATAATACAGACATTTCTATAA 411 0.4039 MPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFHHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQLAALKLLGEKTTLLSPEVIVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFYSVYDGVIIQTFL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2582 136 Gene3D Cupin 1 126 - -
Tpr7g2582 136 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 124 - -
Tpr7g2582 136 Pfam JmjC domain, hydroxylase 13 123 IPR003347 -
Tpr7g2582 136 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 124 - -
Tpr7g2582 136 ProSiteProfiles JmjC domain profile. 1 136 IPR003347 -
Tpr7g2582 136 SMART cupin_9 1 134 IPR003347 -
Tpr7g2582 136 SUPERFAMILY Clavaminate synthase-like 4 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2582 Tpr-Chr7 33080016 33083492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2582 1 123 C2H2 Transcription Factor Family AT5G04240 83.740 1.37e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr7g2582 JmjC 3.6e-34 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2582 - - lja:Lj5g3v1811440.1 248.825