Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2580 ATGAAAGAAAACACCAAAACGACGTCGTCGAGGTTCCAATTCTTCGTACGCTGGAACAGTAACTCCTTAGTGATTCATGCTTCAAGAAAAGACACAGTGGAATTGCTTCTCAAGAAACTTTCATCCAAAACCAAAATTCCGATTAAAGAATTACGATTAATTTACAAAGGAAAACAGCTTCAGGTAGAACAGAATCTCGGCGAATGCGGCATCGAAAACGATGAAACTCTTCAATTGCTCGGATACTTGAGGAGTACACAGTGTCCTCAACTTTGGGGAGCAACAGAATTTATTGCTTCATTGATTCTCAAACTTTGTAGAGGTGAAAATGCGAATGATCCTTTCAAATTTATTCAAAGTCACTTTAGAAGTTACATGAAAAAATCTGAATATTTTGATGTTTTTATGTTTATGAAAATTCCTTCATTGTTGGTAGAACTTTATATGTCGCCCAATGCTAGTAATAAAAGCGTTGCTGATTTGTTGATTAAGGAATTTGTGCAAATATGTTTAGACTTGAAGTGCAAAGAGGTGCAGGTTTTTTACCTTGAAGCTCTTTTGCAGTTTTGTGAATTGCTTAGAGAGGTAGGGTGTAAGTGTGATGATCTTTTGTATGTTTTTTGCCGGAATGGTTTTGCAACTCTGTTGGCGAATGTTGGTGGTGTTACCCCCTTTAGGAATTATTCTAAATGGAGGGTTTTGTTTCGTGGTATTTTTTTCTGTGTTTGTGAGACTTTAGAGGTGTTGTTGAGTTATTTGGATTTGAGTATGAGTTATCCGACTAGTGAGGGGCTTTCATGTAGTGTTGTTTGGGCTTTTGTCAAATTCTCGACACCTTTGAGGAATGGAATTGCCGAGAAACAACCAGCATTCGGTGAATATGAGAATGGAATTTGCTATGAGGAGGATCCTTCAATTGCAGGAGTAGTTGATCAATTTCGTAATGTATTTATTCAGTTATTGACCAAAATGGACAAGTGTTTTCAAGTCATGGAGAATTGCTTGGTTAACAAGGAACAAAGAGAAGGGGGTGGGGATGTTATCCATAATGGGCAGTCTCATTACCTTTTAATCCTGAAGGAATTGTATCACATATCTAAGCTATATAGCGGGGCAGAAGTGATGTTTTGGGGAGTTTTGTTGCGTCGAAAAAGTATGCTATCTCAACTGATTGTCCGGTTTGCGGATAAGAAGGATAATCATAGGTGGGTACTTGAGAACATGAGTGTGACCGATTTTGAATCCAGGAGGCATTTGGCGATGACACTATTCCCTGACTTAAGACATGAATTATTGGGATATGAGATGCTTATTGGCAGGTCTGATGTTTTGGCCGAATCTTTTGAGTACATATCACGAGCTAAGCCTACATCTCTGGAAGGAGGTTTATTTATGGCATTCAAGAATGAAGTTGCTACAGGACCAGGTGTTCTGAGGGAGTGGTTTGTTTTGGTGTGTAAGGAAATATTTAATCCAAAAAATGCTCTTTTTGTGGCATGTCCAAATGACCAAAGGAGATTTTTTCCTAATGCTGCATCTAAGGTACATCCTCTACACCTAAAGTACTTCAGCTTCTCTGGACGTATGATTGCATTAGCTTTGAAGAGTAAGGTGCAAGTGGGTATTTATTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAAACTATATTACTTTAGAAGATATCCGAGATGCCGATCCTATAATGTATCGTAGCTGCAAGCAAATATTGGAGATGAATGCTGATTATATTGATTCAGATGAATTAGGACTGACATTTTCTATAGAGGTGGAAGAATTAGGACACAGGAAAGTGATTGAGCTTTGCCCTGGTGGCGAAAGCCTTGTTGTGGGTAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTGACATCCATATCTAGGCAGGTATCACATTTTGCCGCGGGTTTTGCTGATATTATATCTGGCTCAAGGCTAGAGTTCTTTCGATATTTAGAACTTGAAGATCTTGATTGGATGTTGCATGGAAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACTAAGTATAATGGCTATAAAGAGAATGATTGTCGGATAACTTGGTTTTGGGAGATCGTTGGGAGAATGTCGGCAGAGCAAAAGAAGGTTCTACTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCGTGGTTTGGGTTCCCGTCTATTCATTTGCAAATCCAGCAAATCTGATAATCACTTGCCCTCATCTCACACATGTTTTTACGAGCTGTGCTTTCCAAAGTATTCTTCTAGGGCTATCATGCAAGATCGCCTTAGAATCATCACTCAAGAACACATGAGCTGCAGTTTCGGTACTCTGTGA 2382 0.3896 MKENTKTTSSRFQFFVRWNSNSLVIHASRKDTVELLLKKLSSKTKIPIKELRLIYKGKQLQVEQNLGECGIENDETLQLLGYLRSTQCPQLWGATEFIASLILKLCRGENANDPFKFIQSHFRSYMKKSEYFDVFMFMKIPSLLVELYMSPNASNKSVADLLIKEFVQICLDLKCKEVQVFYLEALLQFCELLREVGCKCDDLLYVFCRNGFATLLANVGGVTPFRNYSKWRVLFRGIFFCVCETLEVLLSYLDLSMSYPTSEGLSCSVVWAFVKFSTPLRNGIAEKQPAFGEYENGICYEEDPSIAGVVDQFRNVFIQLLTKMDKCFQVMENCLVNKEQREGGGDVIHNGQSHYLLILKELYHISKLYSGAEVMFWGVLLRRKSMLSQLIVRFADKKDNHRWVLENMSVTDFESRRHLAMTLFPDLRHELLGYEMLIGRSDVLAESFEYISRAKPTSLEGGLFMAFKNEVATGPGVLREWFVLVCKEIFNPKNALFVACPNDQRRFFPNAASKVHPLHLKYFSFSGRMIALALKSKVQVGIYFDRVFFKQLAGNYITLEDIRDADPIMYRSCKQILEMNADYIDSDELGLTFSIEVEELGHRKVIELCPGGESLVVGSKNREKYVDLLIQNRFVTSISRQVSHFAAGFADIISGSRLEFFRYLELEDLDWMLHGSENAISVEDWKAHTKYNGYKENDCRITWFWEIVGRMSAEQKKVLLFFWTSVKHLPVEGFRGLGSRLFICKSSKSDNHLPSSHTCFYELCFPKYSSRAIMQDRLRIITQEHMSCSFGTL* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2580 793 Gene3D - 1 85 - -
Tpr7g2580 793 Gene3D Hect, E3 ligase catalytic domain 555 637 - -
Tpr7g2580 793 SUPERFAMILY Hect, E3 ligase catalytic domain 433 780 IPR035983 GO:0004842
Tpr7g2580 793 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 6 790 - -
Tpr7g2580 793 Gene3D Hect, E3 ligase catalytic domains 438 668 - -
Tpr7g2580 793 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 6 790 - -
Tpr7g2580 793 Gene3D Hect, E3 ligase catalytic domain 677 792 - -
Tpr7g2580 793 ProSiteProfiles Ubiquitin domain profile. 12 86 IPR000626 GO:0005515
Tpr7g2580 793 CDD HECTc 435 791 IPR000569 GO:0004842
Tpr7g2580 793 SMART hect_3 453 791 IPR000569 GO:0004842
Tpr7g2580 793 SUPERFAMILY Ubiquitin-like 7 85 IPR029071 -
Tpr7g2580 793 SMART ubq_7 12 82 IPR000626 GO:0005515
Tpr7g2580 793 Pfam HECT-domain (ubiquitin-transferase) 484 785 IPR000569 GO:0004842
Tpr7g2580 793 ProSiteProfiles HECT domain profile. 476 793 IPR000569 GO:0004842
Tpr7g2580 793 Pfam Ubiquitin family 15 80 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2580 Tpr-Chr7 33059832 33065752 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2580 - - mtr:MTR_2g025790 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3102 2 35139317 35146080 Tpr7g2580 7 33059832 33065752 PCT