Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2569 ATGGTTTCTCTTGAAGAATCACGTTCGAATTCGAATCGTTTTCCGTTGCCACGAACCTATCAGTATCATTCCTCCAAATCGGAGCGTAACATCGGAAGATCCATGCGAACAAGAAGATCCAGTATCTTCGATGAAGATAATAGTAGTTGCACGTTTACTGAGAGATCCACGTGTGTATCGGAAAATTTAACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTTGCTTCCCGGAATAACAAATCCGGGAAATCCTCTGCAACTGAGCAGGAGCTTCTTGATTTATCTCAAGTTTTCAGTGAATATTCTGCTTGTAGTAGTGATATCTCCGGTGAGCTTCAGCGGTTGGCGACGTTACCGTCGCCGGAATGTAATCTGAAGAATGACGGTGGATGTGATGGTATGGTTGAAGTTGAGCCGGAGCCTTGCATGGGGTTTTTGCAGAGAGAGAATTTCTCAACTGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGCATCGACGGTCTACAATCTTCTTCAGTTGCCGTGAAGCGTTCCGCGGCGGCGAAACTGAGGTTGTTAGCTAAGAATCGTGCTGATAATAGAGTTCTGATTTGTGAATCCGGAGCTGTACCTTTTCTTGTTCCTCTGCTTCGATGCAGTGATCCATGGACGCAAGAACATGCAGTAACAGCACTTTTGAATCTTTCACTTCACGAAGATAACAAGAAACTGATATTCAATGCCGGAGCAGTGAAATCGTTGATTTATGTGTTGAAAACAGGGACAGAGACTTCGAAACAGAACGCAGCTTGTGCACTTTTGAGCTTAGCTTTAGTGGAAGAAAACAAGAGCTCAATTGGAGCTTCTGGCGCGATTCCGCCTCTTGTTTCGCTTCTGCTAAACGGTTCAAACAGAGGGAAAAAGGATGCTTTAACGACACTGTACAAGCTTTGTTCTGTTAAGCAGAATAAGGAGAGAGCCGTTACTGCCGGTGTGGTGAAGCCGTTGGTTGAGCTTGTTGCTGAGCAAGGGAATGGTATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTGGCAGGAATTGAAGAAGGAAAGGAAGCTATTGTTGAAGAAGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAGGAATTTGCGGTTTTAACACTTCTTCAGCTTTGTGCTGAGAGTGTTACAAATAGAGGGTTACTTGTTAGAGAAGGTGGAATTCCTCCACTTGTAGCTCTTTCCCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTTCTTCGATACTTGAGAGAATCAAGACAAGAAGCATCAACTTCGACTTCTTAA 1365 0.4484 MVSLEESRSNSNRFPLPRTYQYHSSKSERNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSGKSSATEQELLDLSQVFSEYSACSSDISGELQRLATLPSPECNLKNDGGCDGMVEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLICESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVTAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2569 454 SUPERFAMILY ARM repeat 166 443 IPR016024 -
Tpr7g2569 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 451 - -
Tpr7g2569 454 Gene3D - 150 309 IPR011989 -
Tpr7g2569 454 SMART arm_5 280 320 IPR000225 GO:0005515
Tpr7g2569 454 SMART arm_5 198 238 IPR000225 GO:0005515
Tpr7g2569 454 SMART arm_5 362 402 IPR000225 GO:0005515
Tpr7g2569 454 SMART arm_5 404 444 IPR000225 GO:0005515
Tpr7g2569 454 SMART arm_5 239 279 IPR000225 GO:0005515
Tpr7g2569 454 MobiDBLite consensus disorder prediction 1 38 - -
Tpr7g2569 454 Pfam Armadillo/beta-catenin-like repeat 200 237 IPR000225 GO:0005515
Tpr7g2569 454 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Tpr7g2569 454 Gene3D - 310 453 IPR011989 -
Tpr7g2569 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
Tpr7g2569 454 PANTHER U BOX DOMAIN-CONTAINING 6 451 - -
Tpr7g2569 454 MobiDBLite consensus disorder prediction 1 28 - -
Tpr7g2569 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2569 Tpr-Chr7 32937238 32940241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2569 146 447 U-box Gene Family AT2G23140 48.387 3.91e-84 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2569 - - gmx:100806768 715.301