Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2564 ATGGACCCTGGGAAGCTATTCATTGGAGGGATTTCCTGGGACACAAATGAAGATCGACTCAGATCGTATTTCCAGAACTTTGGAGATGTAGTTGAAGCTGTGATTATGAAGGATCGTACAACCGGACGTGCCCGTGGTTTTGGATTTGTTGTTTTTTCTGATCCTTCTGTTGCCGAACGAGTTGTTATGGAAAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTTCCTAGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAGTCATGGATCGCCTGGTCCTACTCCTATACGCACAAAGAAGATATTTGTCGGAGGTTTAGCATCGACAGTTACTGAGAGTGATTTTAAGAGTTACTTTGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTATGACCATAACACTCAACGGCCTAGAGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTCGAGAAAGTGTTGCACAAAACTTTTCACGAACTTAACGGTAAAATGGTTGAGGTTAAGAGGGCTGTGCCGAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAGCTAGGTGGATTTAGTTACGGTACTATGAGTAGAGTTGGTAGTTTTTCTAATGGTTTCACTCAGGGATATAGTCCAAGCCTCATTGGAGGACATGGACTTAGATTAGACGGTAGATTGAGTCCTGCTAATGTTGGTCGTAGTGGATATACTCTTTTTAGTCCAAGTTACGGGACAGGACTCAACTTTGAGACACCATTGAGCCAAAATGATAATGAAAACTTTATGTCTAACTTTGTCACGGGACGTGTATTGAACTCTCCATACGGTGCAAGTCCGAGCAGGTACAATAATGCCATAGGGTATGTTGGTTCCAATGCTGGCAACAATTCAGCCATAAGTTCAACAAATCAGAGTTTGTGGAGTAATGGTAATCTTAACTATGCTAATAACCCTGCAAGCTCTGATGCTTTTGTGGGTTACGGAAGTGAAAATTCAAGTTTGGGTTCTTTCGGTAATATCGGATCACTTTGGAGTACTTCTGTTGGGGGTACTACTAATCAAGCTGGAACTATCGGCTCTGGATATGGTAAGAGCAGTCTTAATTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCAGTAGGTTATGGAAAAAGCAATGAAAGCATTGTTGAATCAGATTCATCATACGCTTTCTCAAATGGTAATTATGGTGAGGCATACAAAAATACTTATGAAGCTGGACCATTTTATCAAGACCATACTTGGAGATCAACAACTTCAGAACTAGAGGATTCCGGTTCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGCTCTAGTGGCAATCACATTGGAGCTTATGCTGTTGCTAATAGACAATCAAACAGAGGAATTGCTGCTTAG 1443 0.4096 MDPGKLFIGGISWDTNEDRLRSYFQNFGDVVEAVIMKDRTTGRARGFGFVVFSDPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTESDFKSYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGTMSRVGSFSNGFTQGYSPSLIGGHGLRLDGRLSPANVGRSGYTLFSPSYGTGLNFETPLSQNDNENFMSNFVTGRVLNSPYGASPSRYNNAIGYVGSNAGNNSAISSTNQSLWSNGNLNYANNPASSDAFVGYGSENSSLGSFGNIGSLWSTSVGGTTNQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKSNESIVESDSSYAFSNGNYGEAYKNTYEAGPFYQDHTWRSTTSELEDSGSLSFGLENAVSDLMRKSSSGNHIGAYAVANRQSNRGIAA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2564 480 MobiDBLite consensus disorder prediction 84 100 - -
Tpr7g2564 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Tpr7g2564 480 SUPERFAMILY RNA-binding domain, RBD 3 98 IPR035979 GO:0003676
Tpr7g2564 480 MobiDBLite consensus disorder prediction 79 104 - -
Tpr7g2564 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Tpr7g2564 480 SUPERFAMILY RNA-binding domain, RBD 97 208 IPR035979 GO:0003676
Tpr7g2564 480 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Tpr7g2564 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Tpr7g2564 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 480 - -
Tpr7g2564 480 Gene3D - 3 86 IPR012677 -
Tpr7g2564 480 Gene3D - 103 189 IPR012677 -
Tpr7g2564 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Tpr7g2564 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Tpr7g2564 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Tpr7g2564 480 SMART rrm1_1 5 76 IPR000504 GO:0003723
Tpr7g2564 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2564 Tpr-Chr7 32893030 32896846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2564 6 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.255 2.24e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2564 K14411 - pvy:116115801 602.053