Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2538 ATGGCAGAATCAGACAACGAGTCAGGAGGAGGTCAAACAGGTTACAAAGAGCAAGACAGGTTTCTTCCAATAGCAAACGTAAGCAGAATCATGAAAAAAGCTTTACCAGCAAACGCAAAGATCTCAAAAGAAGCTAAAGAAACAGTTCAAGAGTGTGTATCAGAGTTTATAAGTTTCATAACAGGGGAAGCTTCTGATAAGTGTCAAAAAGAAAAGAGAAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGATTTGAAGATTATGTGGAGCCACTTAAGATTTATTTGAGTAAGTATAGAGAGATGGAAGGTGAAAAAAGTGCTATGATTGGAAGAAGTGATCATAGAGATCATGGAAATGTTGGTGAAGGTAGTGGTGGAGTTTATAATCATGGAGTTGGAGTTTCATCTTCTATGATGATGATGATGGGGCATAATATGTATGGATCTGGAAGTGGATCGCCGTCTTTCGGAAGGAGTAACAGATAG 504 0.381 MAESDNESGGGQTGYKEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEGEKSAMIGRSDHRDHGNVGEGSGGVYNHGVGVSSSMMMMMGHNMYGSGSGSPSFGRSNR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2538 167 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Tpr7g2538 167 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Tpr7g2538 167 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Tpr7g2538 167 SUPERFAMILY Histone-fold 18 123 IPR009072 GO:0046982
Tpr7g2538 167 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 153 - -
Tpr7g2538 167 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr7g2538 167 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Tpr7g2538 167 Gene3D Histone, subunit A 11 128 IPR009072 GO:0046982
Tpr7g2538 167 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2538 Tpr-Chr7 32641078 32642111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2538 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.471 1.29e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr7g2538 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2538 K08065 - gmx:100305641 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3074 2 34909094 34909880 Tpr7g2538 7 32641078 32642111 PCT