Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2516 ATGTCGAGTAGAAGGAAAATTTCACGTTGCCAGAAGGTTGAGATGAAAAAGATTAGCAATGAGAGCAACCTGCAAGTGACTTTCTCGAGGCGCCGTAGCAGGCTCTTCAAGAAAGCTAGTGAGTTATGCACTCTTTGTGGTGCAGAAATTGCTCTTGTTGTTTTTTCACCTCGTGAGAAGGTATTTTCTTTTGGTCACCCCAATATTGATACAGTAATAGATCATTATCTCTCGTTGGTCCCACCTCAAAACAATGACATCACACGATTCATTGAGGCTCAACGTAGAGCTAATGTGCATCAGCTCAATATTGAGCTAACTCAGATCAACAATATGTTGGACAATGAGAAGAGGCGTCATGATGAGCTGAGTCATGTACACAAGATGTTTGAGGATCAGTATTGGTGGGTTTGTCCCATTGATGAGATGAATCAGGGTGAACTTGAATTATTCAAGAACGCATTGAAGGACCTTAAGAAACAAATTGTTATACATGCTGATATGCTTGTAATTCAGGGTCCTCTTACCCTAACCCTACCATTTTTTCAGAACCCTATGTTGCAACCCCATTTGTGTGGTTTCAACAATATGGGAGGAGGAAGAGGATATGACCCTCTAGATTCTTTTGATTCGAGGGTTTAG 642 0.4112 MSSRRKISRCQKVEMKKISNESNLQVTFSRRRSRLFKKASELCTLCGAEIALVVFSPREKVFSFGHPNIDTVIDHYLSLVPPQNNDITRFIEAQRRANVHQLNIELTQINNMLDNEKRRHDELSHVHKMFEDQYWWVCPIDEMNQGELELFKNALKDLKKQIVIHADMLVIQGPLTLTLPFFQNPMLQPHLCGFNNMGGGRGYDPLDSFDSRV* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2516 213 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 177 - -
Tpr7g2516 213 Gene3D - 91 169 - -
Tpr7g2516 213 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
Tpr7g2516 213 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr7g2516 213 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr7g2516 213 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr7g2516 213 ProSiteProfiles MADS-box domain profile. 12 68 IPR002100 GO:0003677|GO:0046983
Tpr7g2516 213 SUPERFAMILY SRF-like 11 84 IPR036879 GO:0003677|GO:0046983
Tpr7g2516 213 SMART madsneu2 7 67 IPR002100 GO:0003677|GO:0046983
Tpr7g2516 213 Coils Coil 99 119 - -
Tpr7g2516 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr7g2516 213 CDD MADS_MEF2_like 11 77 IPR033896 GO:0000977|GO:0045944
Tpr7g2516 213 PANTHER MADS BOX PROTEIN 9 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2516 Tpr-Chr7 32437229 32437870 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2516 5 166 Type I MADS-box Gene Family AT5G60440 50.303 2.87e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr7g2516 SRF-TF 4.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2516 - - mtr:MTR_1g105905 238.039