LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g2498	ATGGAGAAACCACAATACCTGGTGGACGAAAATTTCCCACTCTTCAAACCATCTCGCAAACCCTCCATAAACCCTTCTTCAAATATCAATAAACATAAAGACACTGCAATCCCTCAAAACATCCCTAAAGATACCGCCACAGCTTCCTTCTCAGATCTCGGACTTTCAGAATGGGCGGTGAAGACTTGCAATGAGCTTAAAATGCAGAAACCTCGCCGTGTTCAGCAACATTGTATCCCCAAGGTTCTGGAAGGCCGTCATGTAATTGGCATCGACCACACTGGTAGCGGTAAAACAGTGGCGTTCGCGCTTCCTATTCTCCAGCGTCTTGCTGAGCATCCATTTGGTGTTTTTGCTCTGGTGCTGACGCCCACGCACGAGCTTGCATTTCAACTAGATGAGCAGTTTCGTGCCCTTGGTTCCTCGTTCCACCTCCGCACTTCGGTGGTTGTTGGAGGACGCATAGATACGGTTGAACAGGCTAAAGAGTTGCTAGCCAGACCTCACATCGTTATCGCTACTCCTGGGAGGATCAAGGTCTTGCTCGAGGATAATCAAATTGCTCGTGTTTTCTCTAGGACTAAGTTTCTTGTCTTGGATGAAGCAGACCGACTCCTAGATGTTGGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAACCGGCAAAACCTGTTCTTTTCTGCAACCACAACGAGTAATCTGCAAAAGTTGTGTACGCGTTACCAAGATAAGCTGTATGCATTTCAGGCTTATGAAGGGTTTAAAACAGTCGAAAAGCTTACTCAACAAGTTATATTCATCCCTAAAAATGTGAAGGACGTATATTTGTTATACATCTTGTCTAAAACGAAAGAAATGGGTATTCGATCTGCCATTGTATTTGTCAACACATGCAGAGACTGTCATCGTTTAAATTTAATGTTACAAGTGCTTGATCAAGACGCTGCAGCTCTATATTCATTCAGATCACGGGCTCAGAGGCTCGAAGCACTTTATGAATTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCCGGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCGAGGCTTCCACAAGATTATATCCATCGTGTAGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTCACGCAGAATGATATTGATCTCATTGGTAAAATAGAGGGCCTTATTGAAAAGAATCTTGAAAAGATTGAATATAAAGAAACTGAGGTGCTTTCTCTGATGAAAAAGGTTTTTAGTGCTAAGAATGTTGCAGAAATGAAGATGATTGATGATGGTTTTGATGAGAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGCAGAGAAAGGATTATTAAAGGAAACAAGTAAGAAGAGAAAAAGAAGAAAAGGATTTGCAGAGAAAGGAAAAAAAACAGGAAAAAGTGGAAGTGGAGGCATTAGGATATACTCCTGTAATGATATGATAGTTTCCTCTAATCATAGTATTCAAATTTTTTAG	1551	0.4146	MEKPQYLVDENFPLFKPSRKPSINPSSNINKHKDTAIPQNIPKDTATASFSDLGLSEWAVKTCNELKMQKPRRVQQHCIPKVLEGRHVIGIDHTGSGKTVAFALPILQRLAEHPFGVFALVLTPTHELAFQLDEQFRALGSSFHLRTSVVVGGRIDTVEQAKELLARPHIVIATPGRIKVLLEDNQIARVFSRTKFLVLDEADRLLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLCTRYQDKLYAFQAYEGFKTVEKLTQQVIFIPKNVKDVYLLYILSKTKEMGIRSAIVFVNTCRDCHRLNLMLQVLDQDAAALYSFRSRAQRLEALYEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRLPQDYIHRVGRTARAGRGGLALSLVTQNDIDLIGKIEGLIEKNLEKIEYKETEVLSLMKKVFSAKNVAEMKMIDDGFDEKAKERKKQKLKMLAEKGLLKETSKKRKRRKGFAEKGKKTGKSGSGGIRIYSCNDMIVSSNHSIQIF*	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g2498	516	Gene3D	-	19	251	IPR027417	-
	Tpr7g2498	516	Gene3D	-	252	426	IPR027417	-
	Tpr7g2498	516	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	116	405	IPR027417	-
	Tpr7g2498	516	CDD	DEADc_DDX49	50	241	-	-
	Tpr7g2498	516	MobiDBLite	consensus disorder prediction	469	492	-	-
	Tpr7g2498	516	SMART	ultradead3	67	267	IPR014001	-
	Tpr7g2498	516	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	79	252	IPR014001	-
	Tpr7g2498	516	PANTHER	RNA HELICASE	47	478	-	-
	Tpr7g2498	516	Pfam	DEAD/DEAH box helicase	73	241	IPR011545	GO:0003676\|GO:0005524
	Tpr7g2498	516	SMART	helicmild6	306	387	IPR001650	-
	Tpr7g2498	516	MobiDBLite	consensus disorder prediction	19	43	-	-
	Tpr7g2498	516	Pfam	Helicase conserved C-terminal domain	278	387	IPR001650	-
	Tpr7g2498	516	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	279	426	IPR001650	-
	Tpr7g2498	516	MobiDBLite	consensus disorder prediction	20	43	-	-
	Tpr7g2498	516	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	198	206	IPR000629	-
	Tpr7g2498	516	CDD	SF2_C_DEAD	264	396	-	-
	Tpr7g2498	516	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	48	76	IPR014014	GO:0003724
	Tpr7g2498	516	PANTHER	ATP-DEPENDENT RNA HELICASE DDX49-RELATED	47	478	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g2498	Tpr-Chr7	32243667	32247783	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g2498	44	400	Eukaryotic Initiation Factors Gene Family	AT3G13920	33.053	1.73e-52	182

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g2498	K14778		-	gmx:100798597	693.345