Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2475 ATGGCAAACCACATTGATATGATTTCAACTATCAATGATGTTCCCCGAACTAGGATTCATTGCAGTGTGAAGAAAACACTAATTTACCTGTTTCAGAAACAGCTATCTGAAGGTGTCGTGTACACCCTTACCACGTTTGATGTGGTCAGAAGCACTGGCGAATACCGTCCTACAAGTCATGTTTATAAGTTGGATGCAACTTATAATACTAAATTCACAAGATCTGATAGCATTGTTTTTCCAGAGATAGTCTACACTTTCACACCACCTGCTGATGTTTTCAAAAATGATTTTAATAGAGATTTCTTGATTGATGTTGTGGGAGTGCTGGCTTCTGTGGGTAAGGAAAGGGAGTATGTCAAAAATGGTAAACGGACCAAGGTCATCACCATAGCGTTGAACAATAATGGGTACTCTTATCTCTTAACATTGTTTGGTCACTATGTTGATGAACTTAACTCTTTCCTTGCATCCGGTGAGACAATGAATGCTGTTGATGCACTTTTGTTTGCAAAATCTAAGATCTTCCAAGGCAAACCAGTCCTACAGAATTCTATAAATGCTTCGAGGCTTATGTTTAACCCTGAAATTGCTGAAAATGATTCTCTGAAAAATATGGTGACCACTATTGCTGACTCGCCAGACAATGGTATAGGTAAGCTCCAAGACTTGGAGACAATTAGGTTTGAAGATGAAATGTTGGTTTTGACGCCGCGGTCTACCATTGATGGTTTGTCTGGGAGTAAGAAGGGCTCCGCGTTTGTTGTTCTGGGCACAGTTACAGATATTGTTCGACATGGTGGATGGTGGTACACTGCACACCATTGCCACAAAAAGGTGTATCCAGCTGATGGCATGTACTACTGTGGCAAATGCGTCAAGCATGTTGTTGATGTCACTCCTAGATATCTGCTGAAGTTAGAGGTCACAGATGAGACGGGCGCTACCACCTTTGTCCTGTTTGACCAGGATGCAATGGTGTTGCTTAACAAAGCTTGTGCTGATCTCATTCAATCCCTCAATCATGATCCAAATGAAGACACTTTGCCTACCCTCAGCTGCAGCAAAACATTAGCACTAAGCATTATTTTGAAGAGCGGGGAATTCTTGCTCCTACTTTGGACTCTGTTCAGGAGGTCAATGAGTATATCATGTCACAAATTCTAG 1167 0.4147 MANHIDMISTINDVPRTRIHCSVKKTLIYLFQKQLSEGVVYTLTTFDVVRSTGEYRPTSHVYKLDATYNTKFTRSDSIVFPEIVYTFTPPADVFKNDFNRDFLIDVVGVLASVGKEREYVKNGKRTKVITIALNNNGYSYLLTLFGHYVDELNSFLASGETMNAVDALLFAKSKIFQGKPVLQNSINASRLMFNPEIAENDSLKNMVTTIADSPDNGIGKLQDLETIRFEDEMLVLTPRSTIDGLSGSKKGSAFVVLGTVTDIVRHGGWWYTAHHCHKKVYPADGMYYCGKCVKHVVDVTPRYLLKLEVTDETGATTFVLFDQDAMVLLNKACADLIQSLNHDPNEDTLPTLSCSKTLALSIILKSGEFLLLLWTLFRRSMSISCHKF* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2475 388 Pfam Domain of unknown function DUF223 17 102 IPR003871 -
Tpr7g2475 388 SUPERFAMILY Nucleic acid-binding proteins 244 346 IPR012340 -
Tpr7g2475 388 CDD RPA1_DBD_A_like 4 72 - -
Tpr7g2475 388 Gene3D - 4 74 IPR012340 -
Tpr7g2475 388 Pfam Replication factor-A C terminal domain 257 346 IPR013955 -
Tpr7g2475 388 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 340 - -
Tpr7g2475 388 Gene3D - 232 369 IPR012340 -
Tpr7g2475 388 SUPERFAMILY Nucleic acid-binding proteins 87 209 IPR012340 -
Tpr7g2475 388 CDD RPA1_DBD_C 244 346 IPR013955 -
Tpr7g2475 388 PANTHER REPLICATION FACTOR A 1, RFA1 22 340 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g2475 388 Gene3D - 80 212 IPR012340 -
Tpr7g2475 388 CDD RPA1_DBD_B_like 105 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2475 Tpr-Chr7 32013464 32016034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2475 51 347 Core DNA Replication Machinery Family AT4G19130 24.012 1.89e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2475 - - mtr:MTR_2g048560 300.056