Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2457 ATGGAAGATCAAGATTTTTTAGGTTATGAAACATTTGTTAATGTTGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAAGAACATGAAGAAGAAGAAGAAAGAGAACAAGATGAAGAAGAAGAATGGAAAGATACTGAGGAGAAAGTGGTGGAAAATTTGAAGGAAGAACTTGATGAATTTTCAGTAAGAATGTTCTTTAAAGGATTATCAATAACTGGAATTGAAAATTCAACTTCAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAAATTTTCTCCTATAAGGGTGCAAAAAAGGCTTGATTTTTATGCTGATGAGGCTATGGTTGAATACTTAGCACTCATGGATGGTTTACTTGAAGCTTTGCAGAATAAGATCCGTAGAGTTTATGCCTTTACAGATTCTGAATTGTTGTATAAGATAACATTTGAGGAAAATTCGGACATGCCGCTTTTGATGGCATTAAGAGAAAGGATTCTAGAACATGCCAATAATTTTGAAACTTTCGATCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTGGCCAAAGTAGCTATGGGACTCGTCACTTTTCCTGTGACTGGCAAAACATCACTCGAGAATTGCTCTATTTGTTGCGACGACAAGCCAGTACCAATGATGATTACCTTGAAATGTTCACACACATTCTGTTCACATTGCTTGAGATCCTATGCTGACGGTAAGCTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCCGGATGCAGATATTGTATCTCGTCACCCGAATGCAAGTCTTTTCTTCCATTCACCTCGTATGAATCTCTTGAGAAATCCCTTTCGGAAGCAAATATTGTGCAGTCAGAAAGATTTTATTGTCCGTTTCCGAATTGCTCCGTTCTCCTTGATCCTTGCGAGTGTTTATCGGCAATGGACGGTTCATCTAGTCAGTCAGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATCTGTGTGGAGTGTGGTGTTCCTTGGCATTCTTCCATGACCTGTGAAGAATACCAGAATTTGCCAGAGGAGGAGAGAGATGCTTCTGACATTACATTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTTCTCAAGGTTGTTACCACATGACATGCTGGTGCGGTCACGAGTTCTGCTATTCTTGCGGTGCGGAGTATAGGCACGGCCAACAAACATGTCAATGTGCATTTTGGGATGAAGACAGCCTGACAAACACCCTTCAAGAATCGGAACAATGGACATGGGAGACTTCTACGATCATGGATGCATACTCAGATCAAGAACGATCACAACTCGCACTTATACAACGGTTCCTTGATGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCAATGTACAGAATCCTTTGTAGACCCTTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGATAACTACTATGAAGATTACTTGCAATAA 1575 0.4044 MEDQDFLGYETFVNVEEEEEEEEEDEFCSCCEDEEHEEEEEREQDEEEEWKDTEEKVVENLKEELDEFSVRMFFKGLSITGIENSTSGFSGIGVFMERSSKFSPIRVQKRLDFYADEAMVEYLALMDGLLEALQNKIRRVYAFTDSELLYKITFEENSDMPLLMALRERILEHANNFETFDLKLIPSIDLEQPLQLAKVAMGLVTFPVTGKTSLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISSPECKSFLPFTSYESLEKSLSEANIVQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCKRFICVECGVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELSQGCYHMTCWCGHEFCYSCGAEYRHGQQTCQCAFWDEDSLTNTLQESEQWTWETSTIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYLQ* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2457 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 298 IPR013083 -
Tpr7g2457 524 Gene3D - 74 203 IPR036397 GO:0003676
Tpr7g2457 524 SUPERFAMILY RING/U-box 213 288 - -
Tpr7g2457 524 SUPERFAMILY RING/U-box 369 433 - -
Tpr7g2457 524 Gene3D - 353 469 - -
Tpr7g2457 524 SMART ibrneu5 366 425 IPR002867 -
Tpr7g2457 524 SMART ibrneu5 284 356 IPR002867 -
Tpr7g2457 524 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Tpr7g2457 524 ProSiteProfiles TRIAD supradomain profile. 213 431 IPR044066 -
Tpr7g2457 524 Coils Coil 28 71 - -
Tpr7g2457 524 Pfam Reverse transcriptase-like 87 186 IPR002156 GO:0003676|GO:0004523
Tpr7g2457 524 ProSiteProfiles Zinc finger RING-type profile. 217 261 IPR001841 -
Tpr7g2457 524 MobiDBLite consensus disorder prediction 14 53 - -
Tpr7g2457 524 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 523 - -
Tpr7g2457 524 Pfam IBR domain, a half RING-finger domain 376 425 IPR002867 -
Tpr7g2457 524 Pfam IBR domain, a half RING-finger domain 296 356 IPR002867 -
Tpr7g2457 524 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 523 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2457 Tpr-Chr7 31789628 31797653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2457 69 416 C3H Transcription Factor Family AT2G19610 27.273 7.13e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2457 - - mtr:MTR_2g028870 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2457 7 31789628 31797653 Tpr7g2457 7 31789628 31797653 ECH