Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2348 ATGGAAGAAGAGAATAATGAAATTAAATCATTTAAGGATTTGGGTTTATCTGAGCAATTGGTGGATGCTTGTGAGAAAATTGGTTGGAAGAATCCACTAAAGATTCAAACAGAAGTGATTCCCCACGCGCTACAAGGAAAAGATGTGATTGGACTTTCCCAAACGGGTTCTGGTAAAACTGGAGCTTTTATTCTTCCTATATTGCACGCCTTCTTAGAAGCACCACAACCGCACCTAAACAATTTCTTTGCTTGTATAATGTCTCCCACAAGGGAGCTTGCCATTCAGATTGCTGAGCAGATTAAAGTTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTGGTTGGAGGGACTGACATTGTACAACAATCCATTGAGATAGCAAAGCGACCTCATATTATTGTTGGGACGCCTGGGCGAGTCTTGGATCACCTAAAAGAAACCAAAGGATTTTCTCTTGGTAGATTAAAATTCTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCAGCTACGATGACAAAGAAGGTCCGTAAGATCCAAAGGATGTGTTTAAGGGATCCTGTGAAGGTTGAAGTATCATCCAAGTACTCTACTGTGGACACACTGAAGGAGCATTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTCGTATACATTCTCATTGAAATGACTGGAAGTACGGCAATGGTATTCACTCGGACTTGTGATTCATCGCGGCTTCTGGCTTCAATTCTTACGAAACTTGGTTTGAAAGCCATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGACTCGAAGCCTTGGAACAGTTCAAGTCTGGGGAGTGCAAAATTCTCCTTTGTACTGACGTACTTAGTAGAGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGGCGTTCCGGTGTTGCCATTTCTCTTTTGAACCAGTATGAAGTGGGGTGGTTCAAAAAGATAGAAGAACTTATGGGAGGCAAGAAGGTACCATTGTATACTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAGGCCAAAAGATCCGCAGAAAAGGAAATTAAGGAATCCTATGAGAAGAAGAAAAGGAGGGGAGAAGGAGATTTAAGTGAGGATGAGGAGGATACTGACAAGTACTTAGGTCTCCTTTCATCAAAAATAAATAAGTCAGCAAAAAGAAAAAAGACAATGGCCGGCACCGGTAAGATAGATAACAAAAGGAGATTTAAGTAA 1383 0.4114 MEEENNEIKSFKDLGLSEQLVDACEKIGWKNPLKIQTEVIPHALQGKDVIGLSQTGSGKTGAFILPILHAFLEAPQPHLNNFFACIMSPTRELAIQIAEQIKVLGSEIGVKCAVLVGGTDIVQQSIEIAKRPHIIVGTPGRVLDHLKETKGFSLGRLKFLVLDEADRLLNEDFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPVKVEVSSKYSTVDTLKEHCCFVPAKHKNCYLVYILIEMTGSTAMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRLEALEQFKSGECKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEELMGGKKVPLYTAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRRGEGDLSEDEEDTDKYLGLLSSKINKSAKRKKTMAGTGKIDNKRRFK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2348 460 Gene3D - 225 457 IPR027417 -
Tpr7g2348 460 Gene3D - 1 221 IPR027417 -
Tpr7g2348 460 PANTHER RNA HELICASE 2 430 - -
Tpr7g2348 460 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Tpr7g2348 460 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 387 IPR001650 -
Tpr7g2348 460 PANTHER BNAC02G41920D PROTEIN 2 430 - -
Tpr7g2348 460 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Tpr7g2348 460 MobiDBLite consensus disorder prediction 399 426 - -
Tpr7g2348 460 SMART helicmild6 266 347 IPR001650 -
Tpr7g2348 460 SMART ultradead3 28 230 IPR014001 -
Tpr7g2348 460 Coils Coil 379 410 - -
Tpr7g2348 460 Pfam Helicase conserved C-terminal domain 242 347 IPR001650 -
Tpr7g2348 460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 215 IPR014001 -
Tpr7g2348 460 MobiDBLite consensus disorder prediction 399 419 - -
Tpr7g2348 460 MobiDBLite consensus disorder prediction 439 460 - -
Tpr7g2348 460 Pfam DEAD/DEAH box helicase 34 204 IPR011545 GO:0003676|GO:0005524
Tpr7g2348 460 CDD DEADc_DDX47 10 216 IPR044765 GO:0005524
Tpr7g2348 460 CDD SF2_C_DEAD 227 356 - -
Tpr7g2348 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 368 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2348 Tpr-Chr7 30455252 30462440 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2348 9 358 Eukaryotic Initiation Factors Gene Family AT3G13920 33.903 1.35e-60 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2348 K14777 - gmx:100775796 655.981